View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15950_high_9 (Length: 233)
Name: NF15950_high_9
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15950_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35161521 - 35161296
Alignment:
| Q |
1 |
agaaaattattattatgaatggaaaaacagtgtatgaaaataaataccttggacgagaggaaccaaaccgcaggacaggaca-----ggacggtgaagaa |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35161521 |
agaaaattattattatgaatggaaaaacagtgtatgaaaataaataccttggacgagaggaaccaaaccgcaggacaggacaggacaggacggtgaagaa |
35161422 |
T |
|
| Q |
96 |
cgaacgagggagcgatagaaaacgaagnnnnnnntcaactctcaaaacgcgatgagcgaggattatctaatataatgatgatgagtata------tatgt |
189 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
35161421 |
cgaacgagggagcgatagaaaacgaagaaaaaaatcaactctcaaaacgcgatgagggaggattatctaatataatgatgatgactatatatatctatgt |
35161322 |
T |
|
| Q |
190 |
tttaggttacttcattataccgtttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35161321 |
tttaggttacttcattataccgtttt |
35161296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 39839747 - 39839683
Alignment:
| Q |
52 |
gacgagaggaaccaaaccgcaggacaggacaggacggtgaagaacgaacgagggagcgatagaaaacgaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39839747 |
gacgagaggaaccaaaccgcaggacaggac-----ggtgaagaacgaacgagagagcgatagaaaacgaa |
39839683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 44798664 - 44798705
Alignment:
| Q |
9 |
attattatgaatggaaaaacagtgtatgaaaataaatacctt |
50 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
44798664 |
attattatgaatggaaaacgagtgaatgaaaataaatacctt |
44798705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University