View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15950_low_1 (Length: 750)
Name: NF15950_low_1
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15950_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 3e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 52391477 - 52391653
Alignment:
| Q |
12 |
caaagggaaaaggaacataaaaaatttagcctccaatcatcattagtttttgtaatatcactaataagattccctcttcaagttggaacaggaattctgt |
111 |
Q |
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| T |
52391477 |
caaagggaaaaggaacataaaaaatttagcctccaatcatcattagtttttgtaatatcactaataagattccctcttcaagttggaac------cctgt |
52391570 |
T |
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| Q |
112 |
tccaattttgagagtttaaaaggtatgagaagggatggcttcagaggtggaaaatataggagggaatgtggaaatcttgtaca |
194 |
Q |
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| T |
52391571 |
tccaattttgagagtttgaaaggtatgagaagggatgacttcagagttggaaaatataggagggaatgtggaaatcttgtaca |
52391653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 52393037 - 52393099
Alignment:
| Q |
233 |
acaagattaaatgacgaagcatagaagtacttttactaaaagataagactagttgtttagcag |
295 |
Q |
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| T |
52393037 |
acaagattaaatgacgaagcatagaagtacttttactaaaagataagactagttgtttagcag |
52393099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 388 - 733
Target Start/End: Complemental strand, 8504716 - 8504371
Alignment:
| Q |
388 |
gttgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatgcgaaggaggaatcgacgcttcatctctttttacattgtgatgtagca |
487 |
Q |
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| T |
8504716 |
gttgaggaatgtgctaccgccggaggtttctccgttgtgtgtcatgtgtaatctaaaggaggaatcggcgctacatcttttcttacattgtgatgtggcg |
8504617 |
T |
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| Q |
488 |
agt-tgggtatggcttaagttagatgttatggttgaattgtagtttcctcacacctccaaacttctttattcattgggaatgttggagtgccggaggaaa |
586 |
Q |
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| T |
8504616 |
tgtgcggttttggctcaaatta-atggtgtggttgaatttttggtttttaacccctccaaatttcgttattcattgggaatgttggagtgtagggggtaa |
8504518 |
T |
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| Q |
587 |
ttccaaaaaattaactaagggaatgtggttaatttggcatacttctatttgggttttgtggtgtaggaggaatgataagatcttcaagggaataaacttt |
686 |
Q |
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| T |
8504517 |
ttcaaaaaaggtaacaaaaggcttgtggctaatttggcacactacaatatgggtgctatggaataggcgtaatgagaagattttcaatgggaggaatgtt |
8504418 |
T |
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| Q |
687 |
gaggtggatgatttggtggaggaaatcaaagtgttatcatggtgatg |
733 |
Q |
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| T |
8504417 |
gaggtagaggaattggtggacgagattaaagtgttatcatggcgatg |
8504371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 52393122 - 52393166
Alignment:
| Q |
337 |
agacactagaggatgcaatttgccaatagaactagggcaagacaa |
381 |
Q |
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| T |
52393122 |
agacactagaggatgcaatttgccaatagaactagggcaagacaa |
52393166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 380 - 733
Target Start/End: Original strand, 47476232 - 47476584
Alignment:
| Q |
380 |
aatcttgggttgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatgcgaaggaggaatcgacgcttcatctctttttacattgtg |
479 |
Q |
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| T |
47476232 |
aatcttgcgttgaggaatgtgttaccaccggaagcgtctacgttatgtgtgatgtgcaatgtgaaggaagaatcggcgttacacctctttctacattgtg |
47476331 |
T |
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| Q |
480 |
atgtagcaagttgggtatggcttaagttagatgttatggttgaattgtagtttcctcacacctccaaacttctttattcattgggaatgttggagtgccg |
579 |
Q |
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| T |
47476332 |
acgttgcggttttggtgtggcgtacttt-gatgatgtggttgaattgtagctttttcacacctccaaatttctttgttcattgggaatgttggagtgttg |
47476430 |
T |
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| Q |
580 |
gaggaaattccaaaaaattaactaagggaatgtggttaatttggcatacttctatttgggttttgtggtgtaggaggaatgataagatcttcaagggaat |
679 |
Q |
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| T |
47476431 |
ggggaaattctaaaaaagttaccaaaggattttggttaatttggcacacaacgatttgggttttgtggaataggagaaatgataagatcttcaaggggag |
47476530 |
T |
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| Q |
680 |
aaactttgaggtggatgatttggtggaggaaatcaaagtgttatcatggtgatg |
733 |
Q |
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| T |
47476531 |
gaattttgaggtggaggaattggttgaggaaatcaaagtgttatcttggagatg |
47476584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 576
Target Start/End: Complemental strand, 43073956 - 43073923
Alignment:
| Q |
543 |
ccaaacttctttattcattgggaatgttggagtg |
576 |
Q |
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| T |
43073956 |
ccaaacttgtttattcattgggaatgttggagtg |
43073923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 612 - 703
Target Start/End: Complemental strand, 31035096 - 31035005
Alignment:
| Q |
612 |
tggttaatttggcatacttctatttgggttttgtggtgtaggaggaatgataagatcttcaagggaataaactttgaggtggatgatttggt |
703 |
Q |
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| T |
31035096 |
tggttaatttagcacacaactatttgggttttgtggaaaacgagaaatgacatgattttcaagggaataaactttgaggtggaggaattggt |
31035005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 582
Target Start/End: Original strand, 10430342 - 10430381
Alignment:
| Q |
543 |
ccaaacttctttattcattgggaatgttggagtgccggag |
582 |
Q |
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| T |
10430342 |
ccaaatttgtttattcattgggaatgttggagtgccggag |
10430381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 40931846 - 40931796
Alignment:
| Q |
390 |
tgagaaatgtgctacctccggaggtgtctacgttatgtgtgatgtgcaatg |
440 |
Q |
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| T |
40931846 |
tgaggaatgtcctacctctggaggtgtctacgttatgtgtaatgtgtaatg |
40931796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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