View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15950_low_13 (Length: 239)
Name: NF15950_low_13
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15950_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 1615872 - 1615651
Alignment:
| Q |
18 |
atatttcctatacaccaaattccaatatagcttatagtgtaaatatacacctaaatggttttttcttgggttttgattcgtctccacttaatccagttgc |
117 |
Q |
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| T |
1615872 |
atatttcctatacaccaaattccaatatagcttatagtgtaaatatacacctaaatggttttttcttgggttttgattcgtctccacttaatccagttgc |
1615773 |
T |
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| Q |
118 |
agcttagcggcttttattctactaattgctctggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttgtttgtattgaa |
217 |
Q |
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| T |
1615772 |
agcttagcggcttttattctactatttgctctggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttgtttgtattgaa |
1615673 |
T |
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| Q |
218 |
ttatcttgctttttggttcttc |
239 |
Q |
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| T |
1615672 |
ttatcttgctttttggttcttc |
1615651 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 27541516 - 27541475
Alignment:
| Q |
18 |
atatttcctatacaccaaattccaatatagcttatagtgtaa |
59 |
Q |
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| T |
27541516 |
atatttcctatgcaccaaattcccatatagcttatagtgtaa |
27541475 |
T |
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