View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15950_low_14 (Length: 235)

Name: NF15950_low_14
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15950_low_14
NF15950_low_14
[»] chr4 (2 HSPs)
chr4 (30-221)||(19111055-19111244)
chr4 (132-220)||(19111037-19111126)
[»] scaffold0726 (2 HSPs)
scaffold0726 (30-221)||(4799-4988)
scaffold0726 (132-220)||(4781-4870)
[»] scaffold0557 (3 HSPs)
scaffold0557 (30-221)||(7364-7553)
scaffold0557 (132-220)||(7482-7571)
scaffold0557 (30-106)||(7360-7435)
[»] chr2 (3 HSPs)
chr2 (30-221)||(29467698-29467887)
chr2 (132-220)||(29467680-29467769)
chr2 (30-106)||(29467816-29467891)
[»] chr6 (7 HSPs)
chr6 (30-198)||(14464418-14464584)
chr6 (30-221)||(18716198-18716369)
chr6 (75-221)||(15906083-15906227)
chr6 (132-220)||(14464513-14464602)
chr6 (132-220)||(18716298-18716387)
chr6 (30-106)||(18716194-18716269)
chr6 (30-101)||(15906156-15906226)
[»] chr8 (6 HSPs)
chr8 (118-221)||(7963991-7964094)
chr8 (118-221)||(8224657-8224760)
chr8 (30-106)||(7963868-7963944)
chr8 (132-218)||(7963850-7963937)
chr8 (30-106)||(7964023-7964098)
chr8 (30-106)||(8224653-8224728)
[»] chr5 (2 HSPs)
chr5 (118-220)||(42882102-42882204)
chr5 (30-106)||(42882134-42882209)
[»] chr7 (4 HSPs)
chr7 (132-221)||(39440644-39440733)
chr7 (139-218)||(48521409-48521488)
chr7 (32-106)||(39440640-39440713)
chr7 (32-99)||(48521409-48521475)
[»] chr1 (4 HSPs)
chr1 (132-222)||(44199896-44199986)
chr1 (132-221)||(19192744-19192833)
chr1 (32-107)||(19192764-19192838)
chr1 (32-101)||(44199916-44199984)
[»] scaffold0683 (2 HSPs)
scaffold0683 (132-219)||(7511-7598)
scaffold0683 (32-100)||(7531-7598)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 19111055 - 19111244
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctatatgcnnnnnnnatcttgaatata 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||       ||||||||||||    
T  19111055 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat--gctttttttatcttgaatata 19111152  T
Q  130 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19111153 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttgaaatcatcttaagagcaagtatatata 19111244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 19111037 - 19111126
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatat 220  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  19111037 aaataatatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatat 19111126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 4799 - 4988
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctatatgcnnnnnnnatcttgaatata 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||       ||||||||||||    
T  4799 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagaccaagtatatatgctat--gctttttttatcttgaatata 4896  T
Q  130 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 221  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4897 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttataaattcacattcaaattttggaatcatcttaagagcaagtatatata 4988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 4781 - 4870
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatat 220  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||| |||||||||||    
T  4781 aaataatatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagaccaagtatatat 4870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 7553 - 7364
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctatatgcnnnnnnnatcttgaatata 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||       ||||||||||||    
T  7553 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaatagcaagtatatatgctat--gctttttttatcttgaatata 7456  T
Q  130 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 221  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7455 tctaattatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 7364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 7571 - 7482
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatat 220  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||    
T  7571 aaataatatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaatagcaagtatatat 7482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 7435 - 7360
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat 106  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  7435 aatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatatactat 7360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 29467698 - 29467887
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctatatgcnnnnnnnatcttgaatata 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||        |||||||||||    
T  29467698 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttatgagcaagtatatatgctat--gctttttttctcttgaatata 29467795  T
Q  130 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29467796 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcataagagcaagtatatata 29467887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 29467680 - 29467769
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatat 220  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||| ||||||||||||||    
T  29467680 aaataatatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttatgagcaagtatatat 29467769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 29467816 - 29467891
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat 106  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||||||||||  ||||||||||||||||| ||||    
T  29467816 aatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcataagagcaagtatatatactat 29467891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 14464584 - 14464418
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctatatgcnnnnnnnatcttgaatata 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||       ||||||||||||    
T  14464584 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgc--tatgctttttttatcttgaatata 14464487  T
Q  130 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaat 198  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14464486 tcgaatgatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaat 14464418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 18716369 - 18716198
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctatatgcnnnnnnnatcttgaatata 129  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||                    |    
T  18716369 aatatgctttgtaaaatgatacttacaagtttacattaaaattttggaatcattttaagagcaagtatatatgctatat--------------------a 18716290  T
Q  130 tcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 221  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18716289 tcaaataatatttaaatgtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 18716198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 15906083 - 15906227
Alignment:
Q  75 ggaatcattttaagagcaagtatatatgctatatgcnnnnnnnatcttgaatatatcaaataatatttaaaagtcaatatgctttgtaaatgatacttac 174  Q
    ||||||||||||||||||||||||||| ||||  ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15906083 ggaatcattttaagagcaagtatatatactat--gctttttttatcttgaatatatcaaataatatttaaaagtcaatatgctttgtaaatgatacttac 15906180  T
Q  175 aaattcacattcaaattttggaatcatcttaagagcaagtatatata 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15906181 aaattcacattcaaattttggaatcatcttaagagcaagtatatata 15906227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 14464602 - 14464513
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatat 220  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  14464602 aaataatatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatat 14464513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 18716387 - 18716298
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatat 220  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||    
T  18716387 aaataatatttaaaagtcaatatgctttgtaaaatgatacttacaagtttacattaaaattttggaatcattttaagagcaagtatatat 18716298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 18716269 - 18716194
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat 106  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  18716269 aatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatatactat 18716194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 15906156 - 15906226
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatat 101  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  15906156 aatatgctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatat 15906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 7963991 - 7964094
Alignment:
Q  118 atcttgaatatatcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtata 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7963991 atcttgaatatatcaaataatatttaaaagtcaatattctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtata 7964090  T
Q  218 tata 221  Q
    ||||    
T  7964091 tata 7964094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 8224760 - 8224657
Alignment:
Q  118 atcttgaatatatcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtata 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  8224760 atcttgaatgtatcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttgaaatcatcttaagagtaagtata 8224661  T
Q  218 tata 221  Q
    ||||    
T  8224660 tata 8224657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 7963868 - 7963944
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat 106  Q
    |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  7963868 aatatgctttgtaaaatgatacttaacagttcacattaaaattttagaatcattttaagagcaagtatatttgctat 7963944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 7963850 - 7963937
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgt-aaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatat 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||  | |||||||| ||||||| ||||||| ||||||||||||||||    
T  7963850 aaataatatttaaaagtcaatatgctttgtaaaatgatacttaacagttcacattaaaattttagaatcattttaagagcaagtatat 7963937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 7964023 - 7964098
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat 106  Q
    ||||| ||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  7964023 aatattctttgtaaa-tgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatatactat 7964098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 8224728 - 8224653
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat 106  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||| |||||| ||||||| |||||||||| ||||    
T  8224728 aatatgctttgtaaa-tgatacttacaaattcacattcaaattttgaaatcatcttaagagtaagtatatatactat 8224653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 42882102 - 42882204
Alignment:
Q  118 atcttgaatatatcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42882102 atcttgaatatatcaaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttgaaatcatcttaagagcaagtata 42882201  T
Q  218 tat 220  Q
    |||    
T  42882202 tat 42882204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 42882134 - 42882209
Alignment:
Q  30 aatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat 106  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||    
T  42882134 aatatgctttgtaaa-tgatacttacaaattcacattcaaattttgaaatcatcttaagagcaagtatatatgctat 42882209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 39440733 - 39440644
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 221  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39440733 aaataatatttaaaagtcactatgctttgtaaatgatacttacaagttcacattcaaattttggaatcatcttaagagcaagtatatata 39440644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 48521488 - 48521409
Alignment:
Q  139 atttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatat 218  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| |||| |||||||||||    
T  48521488 atttaaaagtcattatgctttgtaaatgatacttacagattcacattgatattttggaatcatattaaaagcaagtatat 48521409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 39440713 - 39440640
Alignment:
Q  32 tatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctat 106  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  39440713 tatgctttgtaaa-tgatacttacaagttcacattcaaattttggaatcatcttaagagcaagtatatatactat 39440640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 48521475 - 48521409
Alignment:
Q  32 tatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatat 99  Q
    ||||||||||||| |||||||||||  |||||||| | ||||||||||||| |||| |||||||||||    
T  48521475 tatgctttgtaaa-tgatacttacagattcacattgatattttggaatcatattaaaagcaagtatat 48521409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 44199896 - 44199986
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatatat 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||    
T  44199896 aaataatatttaaaagtcactatgctttgtaaatgatacttacaagtttacattcaaattatggaatcatcttaagagcaagtatatatat 44199986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 19192744 - 19192833
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatata 221  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  19192744 aaataatatttaaaagtcactatgctttgtaaatgatacttacaagttcacattcaaattatggaatcatctaaagagcaagtatatata 19192833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 19192764 - 19192838
Alignment:
Q  32 tatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctata 107  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||| |||||    
T  19192764 tatgctttgtaaa-tgatacttacaagttcacattcaaattatggaatcatctaaagagcaagtatatatactata 19192838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 44199916 - 44199984
Alignment:
Q  32 tatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatat 101  Q
    ||||||||||||| ||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  44199916 tatgctttgtaaa-tgatacttacaagtttacattcaaattatggaatcatcttaagagcaagtatatat 44199984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 7511 - 7598
Alignment:
Q  132 aaataatatttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatata 219  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||    
T  7511 aaataatatttaaaaatcactatgctttgtaaatgatacttacaagttcacgttcaaattctagaatcatcttaagagcaagtatata 7598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 7531 - 7598
Alignment:
Q  32 tatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatata 100  Q
    ||||||||||||| |||||||||||||||||| || ||||| | ||||||| |||||||||||||||||    
T  7531 tatgctttgtaaa-tgatacttacaagttcacgttcaaattctagaatcatcttaagagcaagtatata 7598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University