View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15950_low_2 (Length: 484)
Name: NF15950_low_2
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15950_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 11236810 - 11236374
Alignment:
| Q |
18 |
agtttcaccacatcacatcagtaaacaagttagtcataatatttttatttatccaccatatgcattagagagatatgattttaagccctctttagtactt |
117 |
Q |
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| T |
11236810 |
agtttcaccacatcacatcagtaaacaagttagtcataatatttttatttatccaccatatgcattagagagatatgattttaagccctctttagtactt |
11236711 |
T |
|
| Q |
118 |
cacctgagaattaaacaaataatagagagatatgaagttaatcactgaacaaataaaattagatgaaaataaatattaaaaactgatagagaaatggtac |
217 |
Q |
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| T |
11236710 |
cacctgagaatgaaacaaataatagagagatgtgaagtta-------------taaaattagatgaaaataaatattaaaaactgatagagaaatggtac |
11236624 |
T |
|
| Q |
218 |
agttaatcactgaactcaaaccctaaaatccagaatctctcaaaactaatcactgaacccaggacttaaattccttactatctaatctatcatggaccct |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11236623 |
agttaatcactgaactcaaaccctaaaatcccaaatctctcaaaattaatcactgaacccaggacttaaattccttaatatctaatctatcatggaccct |
11236524 |
T |
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| Q |
318 |
aatccctctctaatcttactcactaagtgtataaaatccctaatctctcaatgggtcacggtctcaactactccacagttaacacccacccttcatccgt |
417 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11236523 |
aatctttctctaatcttactcactaagtgtataaaatccctaatctctcaatgggtcacggtctcaactactccacaggtaacacccacccttcatccgt |
11236424 |
T |
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| Q |
418 |
gaacatcaaaacggagaataaatcgccaaaaacatgtttaaataatgtcc |
467 |
Q |
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| T |
11236423 |
gaacatcaaaacggagaataaatcgccaaaaacatgtttaaataatgtcc |
11236374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 207 - 467
Target Start/End: Original strand, 23482308 - 23482564
Alignment:
| Q |
207 |
agaaatggtacagttaatcactgaactcaaaccctaaaatccagaatctctcaaaactaatcactgaacccaggacttaaattccttactatctaatcta |
306 |
Q |
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| T |
23482308 |
agaaatggtacagtta----ctgaactcaaaccctaaaatccagaatctctcaaaattaatcactgaacccaggacttaaattccttactatctaatcta |
23482403 |
T |
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| Q |
307 |
tcatggaccctaatccctctctaatcttactcactaagtgtataaaatccctaatctctcaatgggtcacggtctcaactactccacagttaacacccac |
406 |
Q |
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| T |
23482404 |
tcatggaccctaatctctctctaatcttactcactaagtgtataaaatccctaatctctcaatgggtcacggtctcaactactccacagttaacacccac |
23482503 |
T |
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| Q |
407 |
ccttcatccgtgaacatcaaaacggagaataaatcgccaaaaacatgtttaaataatgtcc |
467 |
Q |
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| T |
23482504 |
ccttcatccgtgaacatcaaaacggagaataaatcgccaaaaacatgtttaaataatgtcc |
23482564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 52610622 - 52610574
Alignment:
| Q |
419 |
aacatcaaaacggagaataaatcgccaaaaacatgtttaaataatgtcc |
467 |
Q |
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| T |
52610622 |
aacatcaaaacggagaataaatggacaaaaacatgtttaaataatgtcc |
52610574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 30254644 - 30254694
Alignment:
| Q |
20 |
tttcaccacatcacatcagtaaacaagttagtcataatatttttatttatc |
70 |
Q |
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| T |
30254644 |
tttcaccacatcacatcagtaaacaagttagtgataatatttctatctatc |
30254694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 30254990 - 30255044
Alignment:
| Q |
194 |
taaaaactgatagagaaatggtacagttaatcactgaactcaaaccctaaaatcc |
248 |
Q |
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|||||| |||||||||||||| ||| ||||||||||||||||||| ||| ||||| |
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| T |
30254990 |
taaaaaatgatagagaaatggcacaattaatcactgaactcaaactctataatcc |
30255044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 30254926 - 30254979
Alignment:
| Q |
104 |
cctctttagtacttcacctgagaattaaacaaataatagagagatatgaagtta |
157 |
Q |
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| T |
30254926 |
cctcttgagtacatcacctgagatttaaacaaaaaatagaatgatatgaagtta |
30254979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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