View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15950_low_3 (Length: 419)
Name: NF15950_low_3
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15950_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 402
Target Start/End: Original strand, 36275952 - 36276328
Alignment:
| Q |
9 |
tgagatgaatgagtagggcgtaagtccttcagagttttgtcctttataaatatgtctcattggactgaaaagtgtgagcattgtttataaattacctttt |
108 |
Q |
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| T |
36275952 |
tgagatgaatgagtagggcgtaagtacttcatcgttttgtcctttataaatatgtctcattggactgaaaagtgtcagcattgtttataaattacccttt |
36276051 |
T |
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| Q |
109 |
gatcctgactgatttccaaggactatgtgacttgtggactggaagtggaacagtaacttaactattatcccctccttcttcatgctgaataaaaaatgcc |
208 |
Q |
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| T |
36276052 |
gatcctga----tttccaaggactgtgtgacttgtgtcctggaagtggaacagtaacttaactattatcccctccttc---atgctgaataaaaaatgcc |
36276144 |
T |
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| Q |
209 |
taagaagccttagaaaagacgagtacttgtattctgaacagtgaacacattcggactcttgattaatgatcgtgtataagattttgcaaactcaagcaat |
308 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36276145 |
taagaagccttagaaaagacgaatacttgtattctgaacagtgaacacattcggactcttgattaatgatcgtgtataagattttgcaaactcaagcagt |
36276244 |
T |
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| Q |
309 |
gaccttcataatcaaaggtacactgattctaatgcatcttactattgactttacaaataatacatacaaaattcaaaattaataagagagaaat |
402 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36276245 |
gaccttcataa----------actgattctaatgcatcttactattgactttacaaataatacatacaaaattcaaaattaataagaaagaaat |
36276328 |
T |
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