View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15950_low_4 (Length: 384)
Name: NF15950_low_4
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15950_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 44786945 - 44787303
Alignment:
| Q |
18 |
caagcatgatacattgatctcgactgaaactcctgaactccatgaaaatcccgcggtgggaactgcggtcgcgcctaccagatccaccaaagtagtgatg |
117 |
Q |
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| T |
44786945 |
caagcatgatacattgatctcgactgaaactcctgaactccatgaaaatcccgcggtgggaactgcagttgcgcctaccagatccaccaaagtagtgatg |
44787044 |
T |
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| Q |
118 |
gcaccaccgtgtaagcagttactagaattctgcaaataaatgaaaaagaacaaaatccattaatgttatttattagggaaagataaaaagatgaaaagag |
217 |
Q |
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| T |
44787045 |
gcaccaccgtgtaagcagttactagaattctgcaaataaatgaaaaagaacaaaatccattaatgttatttattatggaaagataaaaagatgaaaagag |
44787144 |
T |
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| Q |
218 |
taagatacgaacaagtaaattgggaggtatcttcattgagaaaacgatacggccaggctcaatgagatcaaggcgtaagccacgtacgactagatgtccc |
317 |
Q |
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| T |
44787145 |
taagatacgaacaagtaaattgggaggtatcttcattgagaaaacgatacggccaggctcaatgagatcaaggcgtaagccacgtacgactagatgtccc |
44787244 |
T |
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| Q |
318 |
aaaaactcctgaggcaattcattgtctaccgttggtgctaattcttctcctttcttctc |
376 |
Q |
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| T |
44787245 |
aaaaactcctgaggcaattcattgtctaccgttggtgctgattcttctcctttcttctc |
44787303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 347
Target Start/End: Original strand, 44792951 - 44793091
Alignment:
| Q |
207 |
gatgaaaagagtaagatacgaacaagtaaattgggaggtatcttcattgagaaaacgatacggccaggctcaatgagatcaaggcgtaagccacgtacga |
306 |
Q |
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| T |
44792951 |
gatgaatagtgtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgaccaggttcaatgcgatccaatcgtaggccgcgcaagg |
44793050 |
T |
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| Q |
307 |
ctagatgtcccaaaaactcctgaggcaattcattgtctacc |
347 |
Q |
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| T |
44793051 |
ttagatgttccagaaactcctgaggcaattcatcgtctacc |
44793091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 44797650 - 44797793
Alignment:
| Q |
18 |
caagcatgatacattgatctcgactgaaactcctgaactccatgaaaatcccgcggtgggaactgcggtcgcgcctaccagatccaccaaagtagtgatg |
117 |
Q |
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| T |
44797650 |
caagcatgatatattgatctctacggaaactccggatttccacggaaatccagctgcgggaattgcggttccgcctgcgatatccaccagagtagtgata |
44797749 |
T |
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| Q |
118 |
gcaccaccgtgtaagcagttactagaattctgcaaataaatgaa |
161 |
Q |
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| T |
44797750 |
gcaccaccgtgcaagtacttacctgaattctgcgaattaatgaa |
44797793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 44801250 - 44801313
Alignment:
| Q |
223 |
tacgaacaagtaaattgggaggtatcttcattgagaaaacgatacggccaggctcaatgagatc |
286 |
Q |
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| T |
44801250 |
tacgaacgagtaaacgtggaggtatgttcattgagaaaacgacatggccaggctcaatgagatc |
44801313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 44789250 - 44789315
Alignment:
| Q |
63 |
aaatcccgcggtgggaactgcggtcgcgcctaccagatccaccaaagtagtgatggcaccaccgtg |
128 |
Q |
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| T |
44789250 |
aaatccagcggcgggaattgcagctgcgcctatcacatccaccaaagtagtgatggcaccaccgtg |
44789315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 44805762 - 44805843
Alignment:
| Q |
243 |
ggtatcttcattgagaaaacgatacggccaggctcaatgagatcaaggcgtaagccacgtacgactagatgtcccaaaaact |
324 |
Q |
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| T |
44805762 |
ggtatgttcattgtgaaaatgacacggccaggctcaatgacatcgaagcgtaggccacgcaagattagatgttccagaaact |
44805843 |
T |
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