View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15950_low_8 (Length: 313)

Name: NF15950_low_8
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15950_low_8
NF15950_low_8
[»] chr8 (6 HSPs)
chr8 (18-259)||(35593556-35593794)
chr8 (18-124)||(35567779-35567887)
chr8 (18-110)||(35582523-35582618)
chr8 (254-303)||(35593434-35593483)
chr8 (169-249)||(42537311-42537393)
chr8 (72-117)||(38238948-38238994)
[»] chr4 (3 HSPs)
chr4 (191-262)||(6129115-6129188)
chr4 (69-121)||(25396076-25396129)
chr4 (94-122)||(9840412-9840440)
[»] chr2 (4 HSPs)
chr2 (202-263)||(19976368-19976429)
chr2 (72-118)||(17213365-17213412)
chr2 (91-120)||(17772559-17772588)
chr2 (90-118)||(26747923-26747951)
[»] chr6 (2 HSPs)
chr6 (90-119)||(21887747-21887776)
chr6 (90-122)||(879314-879346)
[»] chr7 (2 HSPs)
chr7 (218-262)||(37983193-37983237)
chr7 (90-122)||(41480650-41480682)
[»] chr5 (1 HSPs)
chr5 (93-121)||(36889840-36889868)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 35593794 - 35593556
Alignment:
Q  18 aactactcccttcgatacatttttaaccgtcgcttttgaagaaaaattagctcttattc-atttgtagttttcaagttcaatgcaacattaactattgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35593794 aactactcccttcgatacatttttaaccgtcgcttttgaagaaaaattaactcttattccatttgtagttttcaagttcaatgcaacattaactattgtt 35593695  T
Q  117 ttgtcagttaccaactttacaattgactgcaggaatagaattagatggaattaatgagataacaaataactcatggtattgtaggaaaaacaaacaattc 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  35593694 ttgtcagttaccaacttaacaattgactgcaggaatagaattagatggaat----gagataacaaataactcatggtattgtaggaaaaacaaacaattc 35593599  T
Q  217 tatcaaaagtaacaaaatttattagatttcttgatacgagtaa 259  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35593598 tatcaaaagtaacaaaatttattagatttcttgatacgagtaa 35593556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 35567887 - 35567779
Alignment:
Q  18 aactactcccttcgatacatttttaaccgtcgcttttgaagaaaaattagctcttattcatttgtagttt---tcaagttcaatgcaacattaactattg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||||     |||||||||||||||||||||  ||    
T  35567887 aactactcccttcgatacatttttaaccgtcgcttttgaagaaaaaattgttcttattcttttgtagtttggaaaaagttcaatgcaacattaact-gtg 35567789  T
Q  115 ttttgtcagt 124  Q
    ||||||||||    
T  35567788 ttttgtcagt 35567779  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 35582618 - 35582523
Alignment:
Q  18 aactactcccttcgatacatttttaaccgtcgcttttgaagaaaaattagctcttattcatttgtagttt---tcaagttcaatgcaacattaact 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||||     |||||||||||||||||||||    
T  35582618 aactactcccttcgatacatttttaaccgtcgcttttgaagaaaaaattgttcttattcttttgtagtttggaaaaagttcaatgcaacattaact 35582523  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 35593483 - 35593434
Alignment:
Q  254 gagtaatttttgtgcttctttccttgtgtagcaaatggccagaacctatg 303  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35593483 gagtactttttgtgcttctttccttgtgtagcaaatggccagaacctatg 35593434  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 42537311 - 42537393
Alignment:
Q  169 aatgagataacaaataactcatggtattgtaggaaaaa--caaacaattctatcaaaagtaacaaaatttattagatttcttg 249  Q
    |||||||| | |||||| | |||||||| |||||||||  |||| ||||| |||||||||||||| | ||||||| |||||||    
T  42537311 aatgagatgataaataattaatggtattataggaaaaaaacaaataattcaatcaaaagtaacaacacttattagttttcttg 42537393  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 38238948 - 38238994
Alignment:
Q  72 tattcatttgtagttttcaa-gttcaatgcaacattaactattgttt 117  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||||    
T  38238948 tattcatttgtcattttcaaagttcaatgcaacattaactattgttt 38238994  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 6129115 - 6129188
Alignment:
Q  191 ggtattgtaggaaaaa--caaacaattctatcaaaagtaacaaaatttattagatttcttgatacgagtaattt 262  Q
    |||||||||| |||||  |||| |||| |||||||| |||||||||||||| |||||||||||| | |||||||    
T  6129115 ggtattgtagaaaaaatacaaagaattttatcaaaaataacaaaatttatttgatttcttgatatgtgtaattt 6129188  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 25396129 - 25396076
Alignment:
Q  69 tcttattcatttgtagttttc-aagttcaatgcaacattaactattgttttgtc 121  Q
    ||||||| |||||| |||||| ||||||||||||  ||||||||||||||||||    
T  25396129 tcttatttatttgtcgttttccaagttcaatgcagaattaactattgttttgtc 25396076  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 9840440 - 9840412
Alignment:
Q  94 tcaatgcaacattaactattgttttgtca 122  Q
    |||||||||||||||||||||||||||||    
T  9840440 tcaatgcaacattaactattgttttgtca 9840412  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 19976429 - 19976368
Alignment:
Q  202 aaaaacaaacaattctatcaaaagtaacaaaatttattagatttcttgatacgagtaatttt 263  Q
    ||||||| | |||| ||||||||||| ||||||||||| ||||||||| |||| ||||||||    
T  19976429 aaaaacacataattttatcaaaagtaccaaaatttatttgatttcttggtacgggtaatttt 19976368  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 17213412 - 17213365
Alignment:
Q  72 tattcatttgtagttttcaa-gttcaatgcaacattaactattgtttt 118  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  17213412 tatttatttgtagttttcaaagttcaatgcatcattaactattgtttt 17213365  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 17772559 - 17772588
Alignment:
Q  91 agttcaatgcaacattaactattgttttgt 120  Q
    ||||||||||||||||||||||||||||||    
T  17772559 agttcaatgcaacattaactattgttttgt 17772588  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 26747923 - 26747951
Alignment:
Q  90 aagttcaatgcaacattaactattgtttt 118  Q
    |||||||||||||||||||||||||||||    
T  26747923 aagttcaatgcaacattaactattgtttt 26747951  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 21887776 - 21887747
Alignment:
Q  90 aagttcaatgcaacattaactattgttttg 119  Q
    ||||||||||||||||||||||||||||||    
T  21887776 aagttcaatgcaacattaactattgttttg 21887747  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 879314 - 879346
Alignment:
Q  90 aagttcaatgcaacattaactattgttttgtca 122  Q
    ||||||||||||||||||| |||||||||||||    
T  879314 aagttcaatgcaacattaattattgttttgtca 879346  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 37983237 - 37983193
Alignment:
Q  218 atcaaaagtaacaaaatttattagatttcttgatacgagtaattt 262  Q
    ||||||| |||||||||||||| |||||||||||| | |||||||    
T  37983237 atcaaaaataacaaaatttatttgatttcttgatatgtgtaattt 37983193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 41480682 - 41480650
Alignment:
Q  90 aagttcaatgcaacattaactattgttttgtca 122  Q
    ||||||||||||| |||||||||||||||||||    
T  41480682 aagttcaatgcaatattaactattgttttgtca 41480650  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 36889840 - 36889868
Alignment:
Q  93 ttcaatgcaacattaactattgttttgtc 121  Q
    |||||||||||||||||||||||||||||    
T  36889840 ttcaatgcaacattaactattgttttgtc 36889868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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