View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15951_high_1 (Length: 571)

Name: NF15951_high_1
Description: NF15951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15951_high_1
NF15951_high_1
[»] chr6 (1 HSPs)
chr6 (18-223)||(3847005-3847210)
[»] chr7 (10 HSPs)
chr7 (274-501)||(26613417-26613644)
chr7 (274-428)||(26628465-26628619)
chr7 (274-428)||(26636956-26637110)
chr7 (421-550)||(26635950-26636080)
chr7 (421-544)||(26628296-26628420)
chr7 (402-482)||(26648946-26649023)
chr7 (338-401)||(26649064-26649127)
chr7 (338-401)||(26716506-26716569)
chr7 (402-482)||(26716388-26716465)
chr7 (35-96)||(2886933-2886994)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 3847210 - 3847005
Alignment:
Q  18 cttccaagcagcaacaacaattccgttgcactcaaattccatccaaggttcttcacttccgcaaccttccatgggaatgcagcgatgaagaacttgctga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3847210 cttccaagcagcaacaacaattccgttgcactcaaattccatccaaggttcttcacttccgcaaccttccatgggaatgcagcgatgaagaacttgctga 3847111  T
Q  118 tctttgtagtccgtttggaaaagtgatgagtactaagtgtaatgttggtactaatcagaatcaagcttttgttcaattcgtaagcatgttcattaatttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3847110 tctttgtagtccgtttggaaaagtgatgagtactaagtgtaatgttggtgttaatcagaatcaagcttttgttcaattcgtaagcatgttcattcatttt 3847011  T
Q  218 tgatga 223  Q
    ||||||    
T  3847010 tgatga 3847005  T

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Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 274 - 501
Target Start/End: Complemental strand, 26613644 - 26613417
Alignment:
Q  274 accactgatatttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcaatagtttgttctagaaatttagc 373  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |    
T  26613644 accactgatttttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcattagtttgttctagagatttaac 26613545  T
Q  374 atagacggttgagattgattgatttatgtgtcacaccacaaatatgcatatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggag 473  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||    
T  26613544 atagacggttgagattgattgatttatgtgtcaaaccacaaatatgcatatatattaaatcattgcatatgatactaagtggggattcatttatgaggag 26613445  T
Q  474 aaaacgatgacagcctgtggacttacta 501  Q
    ||||| |||||||||||| ||| |||||    
T  26613444 aaaacaatgacagcctgtagacatacta 26613417  T

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Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 26628619 - 26628465
Alignment:
Q  274 accactgatatttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcaatagtttgttctagaaatttagc 373  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26628619 accactgatttttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcattagtttgttctagaaatttagc 26628520  T
Q  374 atagacggttgagattgattgatttatgtgtcacaccacaaatatgcatatatat 428  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  26628519 atagacggttgagattgattgatttatgtgtcacaccacacatatatatatatat 26628465  T

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Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 26637110 - 26636956
Alignment:
Q  274 accactgatatttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcaatagtttgttctagaaatttagc 373  Q
    ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26637110 accactgatttttgcatggcatgggaggttgcgatttatagggatggatgagagaaggatgctaaagtttggtgtcattagtttgttctagaaatttagc 26637011  T
Q  374 atagacggttgagattgattgatttatgtgtcacaccacaaatatgcatatatat 428  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  26637010 atagacggttgagattgattgatttatgtgtcacactacaaatatatatatatat 26636956  T

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Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 421 - 550
Target Start/End: Complemental strand, 26636080 - 26635950
Alignment:
Q  421 atatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatgacagcctgtggacttactagtatgtgcatttttagagc 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26636080 atatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatgacagcctgtggacttactagtatgtgcatttttagagc 26635981  T
Q  521 c-aaaaggcttcttttttgtggggttgagcc 550  Q
    | ||||||||||||||||||||||| |||||    
T  26635980 caaaaaggcttcttttttgtggggtggagcc 26635950  T

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Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 421 - 544
Target Start/End: Complemental strand, 26628420 - 26628296
Alignment:
Q  421 atatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatgacagcctgtggacttactagtatgtgcatttttagag- 519  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||     
T  26628420 atatatattaaatcatagcatatgatactaagggggaatgcatttatgaggagaaaacgatgacagcctgtagacttactagtatgtgcatatttagagt 26628321  T
Q  520 ccaaaaggcttcttttttgtggggt 544  Q
      ||||  |||||||||||||||||    
T  26628320 aaaaaattcttcttttttgtggggt 26628296  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 402 - 482
Target Start/End: Complemental strand, 26649023 - 26648946
Alignment:
Q  402 tgtcacaccacaaatatgcatatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatg 482  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  26649023 tgtcacaccacaaatatgcata---attaaatcatagcatatggtactatgtgggaatgcatttatgtggagaaaacgatg 26648946  T

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Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 26649127 - 26649064
Alignment:
Q  338 aagtttggtgtcaatagtttgttctagaaatttagcatagacggttgagattgattgatttatg 401  Q
    |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  26649127 aagtttggtggcaatagtttgttctggaaattgagcatagacggttgagattgattgatttatg 26649064  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 26716569 - 26716506
Alignment:
Q  338 aagtttggtgtcaatagtttgttctagaaatttagcatagacggttgagattgattgatttatg 401  Q
    |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  26716569 aagtttggtggcaatagtttgttctggaaattgagcatagacggttgagattgattgatttatg 26716506  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 402 - 482
Target Start/End: Complemental strand, 26716465 - 26716388
Alignment:
Q  402 tgtcacaccacaaatatgcatatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatg 482  Q
    ||||||||||||||||||||||   |||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||    
T  26716465 tgtcacaccacaaatatgcata---attaaatcatagcatatggtactatgtggggatgcatttatgtggagaaaacgatg 26716388  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 2886994 - 2886933
Alignment:
Q  35 caattccgttgcactcaaattccatccaaggttcttcacttccgcaaccttccatgggaatg 96  Q
    |||||||| | ||| |||| ||||||||| ||||||||| | ||||| ||||||||||||||    
T  2886994 caattccgatacacacaaactccatccaaagttcttcaccttcgcaatcttccatgggaatg 2886933  T

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