View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15951_low_1 (Length: 571)
Name: NF15951_low_1
Description: NF15951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15951_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 3847210 - 3847005
Alignment:
| Q |
18 |
cttccaagcagcaacaacaattccgttgcactcaaattccatccaaggttcttcacttccgcaaccttccatgggaatgcagcgatgaagaacttgctga |
117 |
Q |
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| T |
3847210 |
cttccaagcagcaacaacaattccgttgcactcaaattccatccaaggttcttcacttccgcaaccttccatgggaatgcagcgatgaagaacttgctga |
3847111 |
T |
|
| Q |
118 |
tctttgtagtccgtttggaaaagtgatgagtactaagtgtaatgttggtactaatcagaatcaagcttttgttcaattcgtaagcatgttcattaatttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3847110 |
tctttgtagtccgtttggaaaagtgatgagtactaagtgtaatgttggtgttaatcagaatcaagcttttgttcaattcgtaagcatgttcattcatttt |
3847011 |
T |
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| Q |
218 |
tgatga |
223 |
Q |
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|||||| |
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| T |
3847010 |
tgatga |
3847005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 274 - 501
Target Start/End: Complemental strand, 26613644 - 26613417
Alignment:
| Q |
274 |
accactgatatttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcaatagtttgttctagaaatttagc |
373 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |
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| T |
26613644 |
accactgatttttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcattagtttgttctagagatttaac |
26613545 |
T |
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| Q |
374 |
atagacggttgagattgattgatttatgtgtcacaccacaaatatgcatatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggag |
473 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |
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| T |
26613544 |
atagacggttgagattgattgatttatgtgtcaaaccacaaatatgcatatatattaaatcattgcatatgatactaagtggggattcatttatgaggag |
26613445 |
T |
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| Q |
474 |
aaaacgatgacagcctgtggacttacta |
501 |
Q |
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||||| |||||||||||| ||| ||||| |
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| T |
26613444 |
aaaacaatgacagcctgtagacatacta |
26613417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 26628619 - 26628465
Alignment:
| Q |
274 |
accactgatatttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcaatagtttgttctagaaatttagc |
373 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26628619 |
accactgatttttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcattagtttgttctagaaatttagc |
26628520 |
T |
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| Q |
374 |
atagacggttgagattgattgatttatgtgtcacaccacaaatatgcatatatat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
26628519 |
atagacggttgagattgattgatttatgtgtcacaccacacatatatatatatat |
26628465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 26637110 - 26636956
Alignment:
| Q |
274 |
accactgatatttgcatggcatggaaggttgcaatttatagggatggatgagagaaggatgctaaagtttggtgtcaatagtttgttctagaaatttagc |
373 |
Q |
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||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26637110 |
accactgatttttgcatggcatgggaggttgcgatttatagggatggatgagagaaggatgctaaagtttggtgtcattagtttgttctagaaatttagc |
26637011 |
T |
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| Q |
374 |
atagacggttgagattgattgatttatgtgtcacaccacaaatatgcatatatat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
26637010 |
atagacggttgagattgattgatttatgtgtcacactacaaatatatatatatat |
26636956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 421 - 550
Target Start/End: Complemental strand, 26636080 - 26635950
Alignment:
| Q |
421 |
atatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatgacagcctgtggacttactagtatgtgcatttttagagc |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26636080 |
atatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatgacagcctgtggacttactagtatgtgcatttttagagc |
26635981 |
T |
|
| Q |
521 |
c-aaaaggcttcttttttgtggggttgagcc |
550 |
Q |
| |
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| ||||||||||||||||||||||| ||||| |
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| T |
26635980 |
caaaaaggcttcttttttgtggggtggagcc |
26635950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 421 - 544
Target Start/End: Complemental strand, 26628420 - 26628296
Alignment:
| Q |
421 |
atatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatgacagcctgtggacttactagtatgtgcatttttagag- |
519 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
26628420 |
atatatattaaatcatagcatatgatactaagggggaatgcatttatgaggagaaaacgatgacagcctgtagacttactagtatgtgcatatttagagt |
26628321 |
T |
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| Q |
520 |
ccaaaaggcttcttttttgtggggt |
544 |
Q |
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|||| ||||||||||||||||| |
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| T |
26628320 |
aaaaaattcttcttttttgtggggt |
26628296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 402 - 482
Target Start/End: Complemental strand, 26649023 - 26648946
Alignment:
| Q |
402 |
tgtcacaccacaaatatgcatatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatg |
482 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
26649023 |
tgtcacaccacaaatatgcata---attaaatcatagcatatggtactatgtgggaatgcatttatgtggagaaaacgatg |
26648946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 26649127 - 26649064
Alignment:
| Q |
338 |
aagtttggtgtcaatagtttgttctagaaatttagcatagacggttgagattgattgatttatg |
401 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
26649127 |
aagtttggtggcaatagtttgttctggaaattgagcatagacggttgagattgattgatttatg |
26649064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 26716569 - 26716506
Alignment:
| Q |
338 |
aagtttggtgtcaatagtttgttctagaaatttagcatagacggttgagattgattgatttatg |
401 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
26716569 |
aagtttggtggcaatagtttgttctggaaattgagcatagacggttgagattgattgatttatg |
26716506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 402 - 482
Target Start/End: Complemental strand, 26716465 - 26716388
Alignment:
| Q |
402 |
tgtcacaccacaaatatgcatatatattaaatcatagcatatgatactaagtgggaatgcatttatgaggagaaaacgatg |
482 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||| |
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| T |
26716465 |
tgtcacaccacaaatatgcata---attaaatcatagcatatggtactatgtggggatgcatttatgtggagaaaacgatg |
26716388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 2886994 - 2886933
Alignment:
| Q |
35 |
caattccgttgcactcaaattccatccaaggttcttcacttccgcaaccttccatgggaatg |
96 |
Q |
| |
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|||||||| | ||| |||| ||||||||| ||||||||| | ||||| |||||||||||||| |
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| T |
2886994 |
caattccgatacacacaaactccatccaaagttcttcaccttcgcaatcttccatgggaatg |
2886933 |
T |
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