View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15951_low_3 (Length: 478)
Name: NF15951_low_3
Description: NF15951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15951_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 3932823 - 3932379
Alignment:
| Q |
17 |
caccccaagcatatctaggttctgcaacagatcgcttcacacataccctatcaccaatctgtaagacaaatacaaatcatgtaacaaaaataggacaaaa |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3932823 |
caccccaagcatatctaggttctgcgacagatcgcttcacacataccctatcaccaatctgtaagacaaatacaaatcatgtaacaaaaataggacaaaa |
3932724 |
T |
|
| Q |
117 |
atattaagtcagagaattaaaataatctacattcctcttaccctaaaaggaggaacatgctcaatctcctctggttcacaatgccatggattttgaacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3932723 |
atattaagtcagagaattaaaataatctacattcctcttaccctaaaaggaggaacatgctcaatctcctctggttcacaatgccatggattttgaacat |
3932624 |
T |
|
| Q |
217 |
agctcaactcgactaacaaactactgtcaggtcggatacaatatacaatgccaatggttcccggtaccacatttcctaatccatgctttgaagttgtaag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3932623 |
agctcaactcgactaacaaactactgtcaggtcggatacaatatacaatgccaatggttcctggtaccacatttcctaatccatgctttgaagttgtaag |
3932524 |
T |
|
| Q |
317 |
ggttggacgaacacgaacccaatctccaaccttgaactcctcaacccgttccatctctgctgggtcagctttccatcctctggatgctccaggaaatcca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3932523 |
ggttggacgaacacgaacccaatctccaaccttgaactcctcaacccgttccatctctgctgggtcagctttccatcctctggatgctccaggaaatcca |
3932424 |
T |
|
| Q |
417 |
acacggaggattccatcctctgggtcaacacataatactgtccca |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3932423 |
acacggaggattccatcctctgggtcaacacataatactgtccca |
3932379 |
T |
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