View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15951_low_4 (Length: 442)
Name: NF15951_low_4
Description: NF15951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15951_low_4 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 43804656 - 43805056
Alignment:
| Q |
17 |
tacttagagagtggagggtggtgcatcaggaaaatgggcaggctgctcgtctacaacagcctgttcagaatggtcaaacatggcagcgacacgtctattt |
116 |
Q |
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| T |
43804656 |
tacttagagagtggagggtggtgcatcaggaaaatggacaggctgctcgtctacaacagcctgttcagaatggtcaaacatggcagcgacacgtctattt |
43804755 |
T |
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| Q |
117 |
ctgagcagcacaattagattggaattgagatttgcgtaagggacgcatatgaaatatttatgggagaaaaactttgtgggtgcaacctatcttgaatgtt |
216 |
Q |
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| T |
43804756 |
ctgagcagcacaattagattggaattgagatttgcttaagggacgcatatgaaatatttatgggagaaaaactttgtgggtgcaacctatcttgaatgtt |
43804855 |
T |
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| Q |
217 |
aaggaggtgaggcttccgtcttattggcagctatcgagtggatacaaaaattagagttcaaaccagttatctttactttagattcaaagactgttgtgaa |
316 |
Q |
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| T |
43804856 |
aaggaggtgaggcttccgtcttattggcagct----agtggatacaaaaattagagttcaaaccagttatctttactttagattcaaagactgttgtgaa |
43804951 |
T |
|
| Q |
317 |
cgttttaacttgttagtcaaatgatagaatcgaaataggttgcattttaagtagatgttgtagtattttatcattgttttataacaacttttagttagga |
416 |
Q |
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| T |
43804952 |
cgttttaacttgttagtcaaatgatagaatcgagataggttgcattttaagtaga---tgtagtattttatcatcgttctataacaacttttagttagga |
43805048 |
T |
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| Q |
417 |
gagaaact |
424 |
Q |
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| T |
43805049 |
gagaaact |
43805056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 313
Target Start/End: Complemental strand, 3697 - 3517
Alignment:
| Q |
135 |
ttggaattgagatttgcgtaagggacgcatatgaaatatttatgggagaaaa-actttgtgggtgcaacctatcttgaatgttaaggagg-tgaggcttc |
232 |
Q |
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| T |
3697 |
ttggaattgggatttgcttaagggacgagtatgaaatgtttatgggagcaaagactttgcagttgcgatatattttgaatgttaatgagggtgaggcttc |
3598 |
T |
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| Q |
233 |
cgtcttattggcagctatcgagtggatacaaaaattagagttcaaaccagttatctttactttagattcaaagactgttgt |
313 |
Q |
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| T |
3597 |
cgacttattagcagcaatcaagtggatgcgagaataagagttcaagcaaactatctttactttggatttgaagagtgttgt |
3517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 2441964 - 2442074
Alignment:
| Q |
197 |
tgcaacctatcttgaatgttaaggagg-tgaggcttccgtcttattggcagctatcgagtggatacaaaaattagagttcaaaccagttatctttacttt |
295 |
Q |
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| T |
2441964 |
tgcaacctatgttgaatgttaaggaggctaaggcgtcatgcttattagcaattatcgagtgggtgcaaaaattagagttcaagcaagttatctttattct |
2442063 |
T |
|
| Q |
296 |
agattcaaaga |
306 |
Q |
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| T |
2442064 |
agattctaaga |
2442074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 45039197 - 45039306
Alignment:
| Q |
265 |
aattagagttcaaaccagttatctttactttagattcaaagactgttgtgaac-gttttaacttgttagtcaaatgatagaatcgaaataggttgcattt |
363 |
Q |
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||||||||||||||| |||||| |||||| | |||||||||| || ||||||| ||||||| | | |||| ||| ||||||| || |||||| ||||| |
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| T |
45039197 |
aattagagttcaaacaagttatttttactcttgattcaaagagtgctgtgaactcttttaacctatgagtc-aataatagaatagaggtaggttccattt |
45039295 |
T |
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| Q |
364 |
taagtagatgt |
374 |
Q |
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| T |
45039296 |
taagtagatgt |
45039306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 12158712 - 12158761
Alignment:
| Q |
265 |
aattagagttcaaaccagttatctttactttagattcaaagactgttgtg |
314 |
Q |
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| T |
12158712 |
aattagagttcaacaaagttatctttactttagattcaaagagtgttgtg |
12158761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 28790237 - 28790327
Alignment:
| Q |
197 |
tgcaacctatcttgaatgttaagga-ggtgaggcttccgtcttattggcagctatcgagtggatacaaaaattagagttcaaaccagttat |
286 |
Q |
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| T |
28790237 |
tgcaacatattttgaatgttaaagatggtgaggcttcagacttattagcaattatcgtgttgatacaacaattagagttcaatcaagttat |
28790327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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