View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15951_low_6 (Length: 364)
Name: NF15951_low_6
Description: NF15951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15951_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 24351761 - 24351897
Alignment:
| Q |
15 |
gatgaaaatggcaatgttggtcaaaatgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgctagaaaaaggccaccattatttt |
114 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24351761 |
gatgaaaatggaaatgttggtcaaaatgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgctagaaaaaggccaccattatttt |
24351860 |
T |
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| Q |
115 |
atcctcgaccacataagaaatttagcggtatgtaagg |
151 |
Q |
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| T |
24351861 |
atcctcgaccacataagaaatttagcggtatgtaagg |
24351897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 324
Target Start/End: Original strand, 24351969 - 24352072
Alignment:
| Q |
223 |
aatacgaggtcgtcaattctgttaacatttaattcaaaccagttgaactaccactcaccnnnnnnngaaattagggaa--aggaaatttttattaattca |
320 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
24351969 |
aatatgaggtcttcaattctgttaacatttaattcaaaccagttgaactaccactcaccaaaaaaagaaattagggaaagaggaaatttttattaattca |
24352068 |
T |
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| Q |
321 |
ggtg |
324 |
Q |
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|||| |
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| T |
24352069 |
ggtg |
24352072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 24344574 - 24344707
Alignment:
| Q |
15 |
gatgaaaatggcaatgttggtcaaaatgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgctagaaaaaggccaccattatttt |
114 |
Q |
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|||||||||| |||||||||||| | ||| ||||||||| ||||||||| ||||||||||| ||||||||||| | || |||||||| | |||||||||| |
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| T |
24344574 |
gatgaaaatgacaatgttggtcatagtgatgatgaatcagttgagattttagatgaatggccaaatcagaagagtactggaaaaaggtcgccattatttt |
24344673 |
T |
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| Q |
115 |
atcctcgaccacataagaaatttagcggtatgta |
148 |
Q |
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| T |
24344674 |
ctcctcgaccgtataagaaagtaagaggtatgta |
24344707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 24364786 - 24364664
Alignment:
| Q |
15 |
gatgaaaatggcaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgctagaaaaaggccaccattat |
111 |
Q |
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|||||||||| |||||||| ||| | |||| ||||||||| ||||||||| |||||||||| |||| ||||| |||||| |||| |||| || |
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| T |
24364786 |
gatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctagacaaagatcacctttta |
24364687 |
T |
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| Q |
112 |
tttatcctcgaccacataagaaa |
134 |
Q |
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||| | ||||||||||||||||| |
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| T |
24364686 |
tttctactcgaccacataagaaa |
24364664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 24369861 - 24369983
Alignment:
| Q |
15 |
gatgaaaatggcaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgctagaaaaaggccaccattat |
111 |
Q |
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|||||||||| |||||||| ||| | |||| ||||||||| ||||||||| |||||||||| |||| ||||| |||||| |||| |||| || |
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| T |
24369861 |
gatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctagacaaagatcaccttttg |
24369960 |
T |
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| Q |
112 |
tttatcctcgaccacataagaaa |
134 |
Q |
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||| | ||||||||||||||||| |
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| T |
24369961 |
tttcttctcgaccacataagaaa |
24369983 |
T |
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