View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15951_low_8 (Length: 233)

Name: NF15951_low_8
Description: NF15951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15951_low_8
NF15951_low_8
[»] chr8 (27 HSPs)
chr8 (9-211)||(39848588-39848792)
chr8 (9-165)||(38632646-38632802)
chr8 (9-215)||(38632873-38633080)
chr8 (21-215)||(38453694-38453887)
chr8 (50-163)||(38632784-38632897)
chr8 (71-163)||(38453608-38453700)
chr8 (65-164)||(34539015-34539114)
chr8 (54-162)||(34533703-34533811)
chr8 (24-162)||(34916096-34916236)
chr8 (54-164)||(34533841-34533951)
chr8 (71-155)||(34549178-34549262)
chr8 (23-162)||(34916371-34916512)
chr8 (23-152)||(39848368-39848499)
chr8 (73-164)||(34544772-34544863)
chr8 (55-153)||(34533566-34533664)
chr8 (23-102)||(34544858-34544939)
chr8 (58-155)||(38453871-38453968)
chr8 (75-160)||(38632548-38632633)
chr8 (76-163)||(38633062-38633149)
chr8 (57-140)||(39848518-39848601)
chr8 (54-164)||(34916542-34916652)
chr8 (76-154)||(39848783-39848861)
chr8 (60-160)||(39848261-39848361)
chr8 (87-162)||(34548525-34548600)
chr8 (91-150)||(36951478-36951537)
chr8 (54-164)||(34916266-34916376)
chr8 (10-148)||(34533933-34534073)
[»] chr4 (2 HSPs)
chr4 (24-212)||(44474456-44474643)
chr4 (71-163)||(44474640-44474732)
[»] chr3 (2 HSPs)
chr3 (23-164)||(7045895-7046038)
chr3 (71-130)||(7045817-7045876)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 39848792 - 39848588
Alignment:
Q  9 gacatcatcagcagcccaactcataatccctgttccatccatt--gtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactcta 106  Q
    ||||||| || || |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39848792 gacatcaccaacaacccaactcataatccctgttccatccattttgtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactcca 39848693  T
Q  107 aatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39848692 aatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctctcccatcatccattttccatgttttccaat 39848593  T
Q  207 ttcca 211  Q
    |||||    
T  39848592 ttcca 39848588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 38632802 - 38632646
Alignment:
Q  9 gacatcatcagcagcccaactcataatccctgttccatccattgtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaa 108  Q
    ||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||| |||    
T  38632802 gacatcaccagtagcccaactcataattccttttccatccattgtcttttttccaatttcccatgtagacatgcccatctgcatatctataaactccaaa 38632703  T
Q  109 tccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatc 165  Q
    ||||||||||| ||||||||| | ||||||||||||| ||||||||| |||||||||    
T  38632702 tccatgtctaaatccatttgatagacaaccatcaaaagcatcaccatcagcccaatc 38632646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 38633080 - 38632873
Alignment:
Q  9 gacatcatcagcagcccaactcataatccctgttccatccattgtct-tttttccaatttccgatgtagacatccccatttgcaaatctataaactctaa 107  Q
    ||||||| ||| ||||||| ||||||||||| ||||||||||| | | |||||||||||||| | ||| |||||||||||||||||| ||||||||| ||    
T  38633080 gacatcaccagtagcccaagtcataatccctattccatccattttgtctttttccaatttcctacgtaaacatccccatttgcaaatttataaactccaa 38632981  T
Q  108 atccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatt 207  Q
    |||||| ||||||||||||||||| | ||||||||||||||||||| |||||  |||| ||||||  | |||||| |||||||||   | ||||||||||    
T  38632980 atccatatctaagtccatttgacaaataaccatcaaaaacatcaccgttagctgaatccaaaatccatctcccataatccattttgtctattttccaatt 38632881  T
Q  208 tccagtgt 215  Q
    ||||||||    
T  38632880 tccagtgt 38632873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 38453694 - 38453887
Alignment:
Q  21 agcccaactcataatccctgttccatccatt--gtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtcta 118  Q
    |||||||||||| ||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||||||    
T  38453694 agcccaactcatgatccctgttccatccatttcgtcttctttccaatttccggtgtagacatccccatttacaaatctataaactccaagtccatgtcta 38453793  T
Q  119 agtccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccagtgt 215  Q
    |||||||  |||| ||||||||||||   |||||| |||| |||||  |||||| || | |   |||||| | ||| || |||||||||||||||||    
T  38453794 agtccatgcgacagacaaccatcaaattgatcaccgttagtccaattcaaaatccctcttc---catccaatctccctgctttccaatttccagtgt 38453887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 38632897 - 38632784
Alignment:
Q  50 ttgtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacat 149  Q
    |||||| |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||  ||||||||| || ||||    
T  38632897 ttgtctattttccaatttccagtgtagacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaaccatcgaagacat 38632798  T
Q  150 caccattagcccaa 163  Q
    ||||| ||||||||    
T  38632797 caccagtagcccaa 38632784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 38453608 - 38453700
Alignment:
Q  71 atgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaa 163  Q
    |||| |||||||||||||||||||||| |||||| | |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  38453608 atgtcgacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaaccatcaaaaacatcaccattagcccaa 38453700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 34539015 - 34539114
Alignment:
Q  65 tttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaat 164  Q
    ||||||| ||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||  |||||||| ||||||||| |||||||||||||    
T  34539015 tttccgaagtacacatccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatcgccattagcccaat 34539114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 34533703 - 34533811
Alignment:
Q  54 cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 153  Q
    |||||||||||| |||  ||| |||||||||||||| ||||||| |||||| | |||||||||||||||||||||||  ||||||||| |||||| ||||    
T  34533703 cttttttccaatgtccactgtggacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaaccatcgaaaacaacacc 34533802  T
Q  154 attagccca 162  Q
    |||||||||    
T  34533803 attagccca 34533811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 34916096 - 34916236
Alignment:
Q  24 ccaactcataatccctgttccatccattgtctt--ttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagt 121  Q
    |||| ||||||||||| ||||||||||| | ||  |||||||||||||  |||||||||| |||||||||||||||||||||| | | |||||| |  ||    
T  34916096 ccaattcataatccctcttccatccattttattatttttccaatttccagtgtagacatctccatttgcaaatctataaactccatagccatgtttctgt 34916195  T
Q  122 ccatttgacatacaaccatcaaaaacatcaccattagccca 162  Q
    |||||||||  | ||||||| ||||||||||| ||||||||    
T  34916196 ccatttgaccaataaccatcgaaaacatcaccgttagccca 34916236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 34533841 - 34533951
Alignment:
Q  54 cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 153  Q
    |||||||||||| |||  ||| |||||||||||||||| |||||||||||| | |||||| | |||||| |||||||  |||||||||||||||||||||    
T  34533841 cttttttccaatgtccagtgtggacatccccatttgcatatctataaactccatatccatctttaagtctatttgaccaacaaccatcaaaaacatcacc 34533940  T
Q  154 attagcccaat 164  Q
    || | ||||||    
T  34533941 atcaacccaat 34533951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 34549178 - 34549262
Alignment:
Q  71 atgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccat 155  Q
    |||||||||| |||||||| |||||||||||||| | |||||||| |||||||||| |||  |||||||||||||||||||||||    
T  34549178 atgtagacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccatcaaaaacatcaccat 34549262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 34916371 - 34916512
Alignment:
Q  23 cccaactcataatccctgttccatccattgt--cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaag 120  Q
    ||||| ||||||||||| |||||||| ||    |||||| |||||||||    ||||||||||||||||||||||||||||||| | |||||||| || |    
T  34916371 cccaattcataatcccttttccatccttttctcctttttcccaatttccagcatagacatccccatttgcaaatctataaactccatatccatgtttatg 34916470  T
Q  121 tccatttgacatacaaccatcaaaaacatcaccattagccca 162  Q
    ||||||||||  | ||||||| ||||||||| | ||||||||    
T  34916471 tccatttgaccaataaccatcgaaaacatcatcgttagccca 34916512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 39848499 - 39848368
Alignment:
Q  23 cccaactcataatccctgttccatccattg--tcttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaag 120  Q
    |||||||||||||||||  ||||||| ||   | |||||||||| ||||||| |||||| || |||||||| |||||||||||| |||||||||| ||||    
T  39848499 cccaactcataatccctaatccatccctttcatgttttttccaaattccgatatagacacccacatttgcatatctataaactccaaatccatgtataag 39848400  T
Q  121 tccatttgacatacaaccatcaaaaacatcac 152  Q
      || ||||   ||||||||||||||||||||    
T  39848399 cgcaattgatcgacaaccatcaaaaacatcac 39848368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 34544772 - 34544863
Alignment:
Q  73 gtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaat 164  Q
    |||||||| |||||||| |||||||||||||| | ||||||||||| |||||||||||  ||| ||||  ||||||||||||||| ||||||    
T  34544772 gtagacattcccatttgaaaatctataaactccatatccatgtctatgtccatttgaccaacatccattgaaaacatcaccattaacccaat 34544863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 34533566 - 34533664
Alignment:
Q  55 ttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 153  Q
    ||||||||| ||||| || |||||||||||||| ||| || ||||||||| | |||||||| ||||||||||| ||  ||||||||| |||||||||||    
T  34533566 ttttttccattttccaatatagacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccatcgaaaacatcacc 34533664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 34544858 - 34544939
Alignment:
Q  23 cccaactcataatccctgttccatccattgtct--tttttccaatttccgatgtagacatccccatttgcaaatctataaac 102  Q
    ||||| ||||||||||| ||||||||||| | |  ||||||||||| || ||||||||||||||||||||||||||||||||    
T  34544858 cccaattcataatccctcttccatccattttatcatttttccaattaccaatgtagacatccccatttgcaaatctataaac 34544939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 38453871 - 38453968
Alignment:
Q  58 tttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccat 155  Q
    ||||||||||||  |||  |||||||||||| || |||||||||||| | ||||||||  ||||| |||||||  |||||||||||||||||||||||    
T  38453871 tttccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaaccatcaaaaacatcaccat 38453968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 38632633 - 38632548
Alignment:
Q  75 agacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcc 160  Q
    |||||||||||||||||  |||| |||||| ||||||||||  |||||||||||||  |||| |||| ||||||||||||||||||    
T  38632633 agacatccccatttgcagctctaaaaactccaaatccatgtagaagtccatttgaccaacaagcatccaaaacatcaccattagcc 38632548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 38633149 - 38633062
Alignment:
Q  76 gacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaa 163  Q
    |||||||||||| ||| |||||||||||| | |||||||| |||| |||||||||  ||||||||| || ||||||||| ||||||||    
T  38633149 gacatccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatcgaagacatcaccagtagcccaa 38633062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 39848601 - 39848518
Alignment:
Q  57 ttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccat 140  Q
    ||||||||||||| ||| ||||||||||||||||  |||||||||||| | ||||||||  |||||||||||||  ||||||||    
T  39848601 ttttccaatttccaatggagacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 39848518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 34916542 - 34916652
Alignment:
Q  54 cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 153  Q
    |||||| |||||||||  ||||||| |  ||||||||| |||||||||||| | ||||||||  |||||||||||||  ||||||||| |||| | ||||    
T  34916542 ctttttcccaatttccagtgtagacgtttccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaaccatcgaaaatagcacc 34916641  T
Q  154 attagcccaat 164  Q
    |||| ||||||    
T  34916642 attaccccaat 34916652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 39848861 - 39848783
Alignment:
Q  76 gacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacca 154  Q
    ||||||||| || ||| |||||||||||| | |||||||| ||||||||||||||  ||||||||| || |||||||||    
T  39848861 gacatccccgttagcatatctataaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcacca 39848783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 39848361 - 39848261
Alignment:
Q  60 tccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgt-ctaagtccatttgacatacaaccatcaaaaacatcaccattag 158  Q
    ||||||||||  ||||||| || ||||||||||||||| |||||| | |||||| | | ||||| |||||||  |||||||| |||||||||||||||||    
T  39848361 tccaatttccagtgtagacgtcaccatttgcaaatctaaaaactccatatccatatacaaagtc-atttgaccaacaaccattaaaaacatcaccattag 39848263  T
Q  159 cc 160  Q
    ||    
T  39848262 cc 39848261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 34548525 - 34548600
Alignment:
Q  87 ttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagccca 162  Q
    |||||||| ||||||||  |||||||||||||| ||||||||||   | |||||| |||| |||||||||||||||    
T  34548525 ttgcaaatatataaacttcaaatccatgtctaactccatttgaccagccaccatcgaaaatatcaccattagccca 34548600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 36951537 - 36951478
Alignment:
Q  91 aaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatc 150  Q
    |||||||||||||| | |||| ||||||||||||||| ||  ||||||||||||||||||    
T  36951537 aaatctataaactccagatccttgtctaagtccatttaaccaacaaccatcaaaaacatc 36951478  T

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Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 34916266 - 34916376
Alignment:
Q  54 cttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 153  Q
    |||||| |||||||||  ||||||| |  ||||| ||| |||||||||||| | ||||||||  |||||||||||||  | ||||||| |||| | ||||    
T  34916266 ctttttcccaatttccagtgtagacgtttccattagcagatctataaactccatatccatgtgaaagtccatttgaccaataaccatcgaaaatagcacc 34916365  T
Q  154 attagcccaat 164  Q
    |||| ||||||    
T  34916366 attaccccaat 34916376  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 34533933 - 34534073
Alignment:
Q  10 acatcatcagcagcccaactcataatccctgttccatccattgtct--tttttccaatttccgatgtagacatccccatttgcaaatctataaactctaa 107  Q
    |||||| || || ||||| ||||||||||| | ||||| ||| ||   |||| |||||||||  | || ||||| |||||| || |||||||||| | |     
T  34533933 acatcaccatcaacccaattcataatccctttcccatctattttcccattttcccaatttcctctataaacatctccatttacatatctataaaccccat 34534032  T
Q  108 atccatgtctaagtccatttgacatacaaccatcaaaaaca 148  Q
     ||||||| ||||||||||||||  ||||||||| ||||||    
T  34534033 gtccatgtttaagtccatttgaccaacaaccatcgaaaaca 34534073  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 44474643 - 44474456
Alignment:
Q  24 ccaactcataatccctgttccatccatt--gtcttttttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaagt 121  Q
    |||||||||  ||||| |||||||||||  ||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||||||||||||||     
T  44474643 ccaactcatggtccctcttccatccattttgtcatttttccaatttccgatatagacatccccatttacaaatgtataaactccaaatccatgtctaagc 44474544  T
Q  122 ccatttgacatacaaccatcaaaaacatcaccattagcccaatcgaaaatcgctgtcccatcatccattttccatgttttccaatttccag 212  Q
    |||||||||| |||||||| ||||  |||| ||||||||||||  ||| || || | |   |||||| ||||| |||||||||||||||||    
T  44474543 ccatttgacagacaaccattaaaatgatcatcattagcccaattcaaattccctcttc---catccaatttccctgttttccaatttccag 44474456  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 44474732 - 44474640
Alignment:
Q  71 atgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcaccattagcccaa 163  Q
    |||| ||||||||||||||||||| || |||||| | |||||||| ||||||||||||||   ||||| ||||||||||||||||||| ||||    
T  44474732 atgtcgacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaaccttcaaaaacatcaccattagtccaa 44474640  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 7045895 - 7046038
Alignment:
Q  23 cccaactcataatccctgttccatccattgtctttt--ttccaatttccgatgtagacatccccatttgcaaatctataaactctaaatccatgtctaag 120  Q
    |||||||||| |||||| ||||||||||| ||| ||  |||||||||||   ||||||||| ||||||  |||| ||||||||| |||||||| ||| ||    
T  7045895 cccaactcatgatccctcttccatccattttctcttctttccaatttcctccgtagacatcaccatttctaaatttataaactccaaatccatctctgag 7045994  T
Q  121 tccatttgacatacaaccatcaaaaacatcaccattagcccaat 164  Q
    |||||||||||  ||||||||||||  |||||||||| ||||||    
T  7045995 tccatttgacaggcaaccatcaaaactatcaccattaacccaat 7046038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 7045817 - 7045876
Alignment:
Q  71 atgtagacatccccatttgcaaatctataaactctaaatccatgtctaagtccatttgac 130  Q
    |||| |||||| |||||||||||| || |||||| | |||||||| ||||||||||||||    
T  7045817 atgttgacatctccatttgcaaatgtaaaaactccatatccatgtataagtccatttgac 7045876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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