View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15952_high_1 (Length: 570)
Name: NF15952_high_1
Description: NF15952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15952_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Complemental strand, 38129453 - 38128916
Alignment:
| Q |
16 |
caccaacagttggacaaacgccggcaggaaagccatgaactttacttttctcccatatcctataatatacttgtccgagacttgcaccggtttgaatgat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38129453 |
caccaacagttggacaaacgccggcaggaaagccatgaactttacttttctcccatatcctataatatacttgtccgagacttgcaccggtttgaatgat |
38129354 |
T |
|
| Q |
116 |
agcaatctcattttgtatatcgacggtgatgttttgaaaattgaacatatcaaggataataaagggagtatcagagatatatgaaataccttcaaaatca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38129353 |
agcaatctcattttgtatatcgacggtgatgttttgaaaattgaacatatcaaggataataaagggagtatcagagatatacgaaataccttcaaaatca |
38129254 |
T |
|
| Q |
216 |
tggcctccacttctaattttgagatgaagaccaatggtttttgagcaaagaacagtggcttgtacttggtcttcatgcaaaggggtgatgataagtaatg |
315 |
Q |
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| T |
38129253 |
tgacctccacttctaattttgagatgaagaccaatggtttttgagcaaagaacagtggcttgtacttggtcttcatgcaaaggggtgatgataagtaatg |
38129154 |
T |
|
| Q |
316 |
gttttgtggtggagggggtgttgaacctagcatttctaataaaggcttgaaaaatagaggtgtatgatgcattggtttgggaatagactatgttggaaac |
415 |
Q |
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| T |
38129153 |
gttttgtggtggagggggtgttgaacctagcatttctaataaaggcttgaaaaatagaggtgtatgatgcattggtttgggaatagactatgttggaaac |
38129054 |
T |
|
| Q |
416 |
ttgatttggttgggtagtatggcttttaagacactgaagaaaagttacataaatggactcacttgatggggctgcatgagaattagaaacatgtacaaga |
515 |
Q |
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| T |
38129053 |
ttgatttggttgggtagtatggtttttaagacactgaagaaaagtgacataaatggactcacttgatggggctgcatgagaattagaaacatgtacaaga |
38128954 |
T |
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| Q |
516 |
agaagtataataaaaacagaaagaaatggaacagaatt |
553 |
Q |
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| T |
38128953 |
agaagtataataaaaacagaaagaaatggaacagaatt |
38128916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 38125500 - 38125434
Alignment:
| Q |
16 |
caccaacagttggacaaacgccggcaggaaagccatgaactttacttttctcccatatcctataata |
82 |
Q |
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|||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38125500 |
caccaacagtaatacaaaccccagcaggaaagccatgaactttactcttctcccatatcctataata |
38125434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 377 - 510
Target Start/End: Original strand, 487373 - 487504
Alignment:
| Q |
377 |
gtatgatgcattggtttgggaatagactatgttggaaacttgatttggttgggtagtatggcttttaagacactgaagaaaagttacataaatggactca |
476 |
Q |
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|||||||||||||||||||||||||| | |||| | ||||||| | || || || ||| |||| ||||| |||| |||||||||||||||| |||| |
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| T |
487373 |
gtatgatgcattggtttgggaatagatt--gttgaacacttgatattgtgcagttgtgtggtttttcagacaatgaacaaaagttacataaatgcactcg |
487470 |
T |
|
| Q |
477 |
cttgatggggctgcatgagaattagaaacatgta |
510 |
Q |
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| T |
487471 |
cttgatggggctacatgataattagaaacatgta |
487504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 11933713 - 11933665
Alignment:
| Q |
16 |
caccaacagttggacaaacgccggcaggaaagccatgaactttactttt |
64 |
Q |
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||||||| || |||||||||||||| ||||| ||||||||||||||||| |
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| T |
11933713 |
caccaacggtaggacaaacgccggccggaaaaccatgaactttactttt |
11933665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 11946934 - 11946886
Alignment:
| Q |
16 |
caccaacagttggacaaacgccggcaggaaagccatgaactttactttt |
64 |
Q |
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||||||| || |||||||||||||| ||||| ||||||||||||||||| |
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| T |
11946934 |
caccaacggtaggacaaacgccggccggaaaaccatgaactttactttt |
11946886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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