View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15952_high_12 (Length: 249)
Name: NF15952_high_12
Description: NF15952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15952_high_12 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: scaffold0691 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 6724 - 6943
Alignment:
| Q |
19 |
tgtacacctctcagaagatttgtttcnnnnnnnaggaattggaacaattctccgagggcaaacaatactgcagtttctgccattcaattcttatctcata |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6724 |
tgtacacctctcagaagatttgtttctttttttaggaattggaacaattctccgagggcaaacaatactgcagtttctgccattcaattcttatctcata |
6823 |
T |
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| Q |
119 |
ctgcagnnnnnnnnnnnnctttctttccgttgggtatattaactttgaacagtgccaaagaaaaataagcttcaaaagtcaaaggaaaggtgtgccatta |
218 |
Q |
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| T |
6824 |
ctgcagttttttttttt-ctttctttccgttgggtatattaactttgaacagtgccaaagaaaaataagcttcaaaagtcaaaggaaaggtgtgccatta |
6922 |
T |
|
| Q |
219 |
ttttttgttaatcagcctatg |
239 |
Q |
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||||||||| ||||||||||| |
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| T |
6923 |
ttttttgtttatcagcctatg |
6943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 2839172 - 2839255
Alignment:
| Q |
19 |
tgtacacctctcagaagatttgtttcnnnnnnnaggaattggaacaattctccgagggcaaacaatactgcagtttctgccatt |
102 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| ||| || |||||||||||||||||||| ||||||||| |
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| T |
2839172 |
tgtacacctctcagaagatttgtttcttcttttaggaatttgaacacttcccctagggcaaacaatactgcagtctctgccatt |
2839255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 2856382 - 2856465
Alignment:
| Q |
19 |
tgtacacctctcagaagatttgtttcnnnnnnnaggaattggaacaattctccgagggcaaacaatactgcagtttctgccatt |
102 |
Q |
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| T |
2856382 |
tgtacacctctcaaaagatttgtttcttcttttaggaactggaacacttcccccagggcaaacaatactgcagtttctgccatt |
2856465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 5412442 - 5412376
Alignment:
| Q |
52 |
aggaattggaacaattctccgagggcaaacaatactgcagtttctgccattcaattcttatctcata |
118 |
Q |
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||||||||||||| || || |||||||||||||||||||||||||||||| || ||||| |||||| |
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| T |
5412442 |
aggaattggaacagtttcccaagggcaaacaatactgcagtttctgccatttaactcttagctcata |
5412376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 2748564 - 2748481
Alignment:
| Q |
19 |
tgtacacctctcagaagatttgtttcnnnnnnnaggaattggaacaattctccgagggcaaacaatactgcagtttctgccatt |
102 |
Q |
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||||||| |||||||||||||||||| ||||| ||||||| ||| || ||| ||||| |||||||||||||||||||| |
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| T |
2748564 |
tgtacacttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatt |
2748481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 2806827 - 2806744
Alignment:
| Q |
19 |
tgtacacctctcagaagatttgtttcnnnnnnnaggaattggaacaattctccgagggcaaacaatactgcagtttctgccatt |
102 |
Q |
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||||||||| | |||||||||||||| |||||| |||||| ||| | |||||||| ||||||||||||||||||||| |
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| T |
2806827 |
tgtacaccttttagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataatactgcagtttctgccatt |
2806744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 5412284 - 5412211
Alignment:
| Q |
148 |
ttgggtatattaactttgaacagtgccaaagaaaaataagcttcaaaagtcaaaggaaaggtgtgccattattt |
221 |
Q |
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| T |
5412284 |
ttgggtacagtaactttgaatggtgctaaggaaatttaagcttcaaaagtcaaagcaaagttttgccattattt |
5412211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 12157324 - 12157352
Alignment:
| Q |
211 |
tgccattattttttgttaatcagcctatg |
239 |
Q |
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| T |
12157324 |
tgccattattttttgttaatcagcctatg |
12157352 |
T |
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