View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15952_low_12 (Length: 256)

Name: NF15952_low_12
Description: NF15952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15952_low_12
NF15952_low_12
[»] chr5 (2 HSPs)
chr5 (18-246)||(39853532-39853760)
chr5 (121-232)||(39853855-39853966)
[»] chr2 (4 HSPs)
chr2 (97-195)||(13489278-13489376)
chr2 (97-205)||(13488870-13488978)
chr2 (129-204)||(4603461-4603536)
chr2 (137-219)||(11471835-11471917)
[»] chr4 (5 HSPs)
chr4 (97-202)||(32702408-32702513)
chr4 (97-205)||(32701998-32702106)
chr4 (134-171)||(5243991-5244028)
chr4 (137-205)||(14336638-14336706)
chr4 (139-171)||(5243946-5243978)
[»] chr8 (2 HSPs)
chr8 (134-205)||(42620469-42620540)
chr8 (137-205)||(29218417-29218485)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 39853760 - 39853532
Alignment:
Q  18 gatatcatacagagtgacttgtgtgcagtttaattgagaaaaaatgagaatagacattgaagcagaatttatttgcaatgaggttgattgaaagggtaat 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39853760 gatatcatacatagtgacttgtgtgcagtttaattgagaaaaaatgagaatagacattgaagcagaatttatttgcaatgaggttgattgaaagggtaac 39853661  T
Q  118 ggcgtaaacttttaataatttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaatttaaaggacatgaggagatat 217  Q
    ||||||||||||||||||||||||| | |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  39853660 ggcgtaaacttttaataatttaaagaatcaatctaaaattttagaaatttaaaggacatatccgatacaaatgtaaaatttaaaggacctgaggagatat 39853561  T
Q  218 ttagcctaaaatttatttatttttctgtg 246  Q
    || ||||||||||||||||||||||||||    
T  39853560 ttggcctaaaatttatttatttttctgtg 39853532  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 39853855 - 39853966
Alignment:
Q  121 gtaaacttttaataatttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaatttaaaggacatgaggagatattta 220  Q
    |||| |||||||||| |||||||| |||||| |||||||||||| |||||| |  |||| ||||||||  ||||| ||||||||| |  |||| || |||    
T  39853855 gtaagcttttaataacttaaaggatcaatctgaaactttaaaaacttaaagaatttatctgatacaaacttaaaacttaaaggacctagggaggtactta 39853954  T
Q  221 gcctaaaattta 232  Q
    ||||||| ||||    
T  39853955 gcctaaatttta 39853966  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 13489278 - 13489376
Alignment:
Q  97 gaggttgattgaaagggtaatggcgtaaacttttaataatttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaa 195  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||| |||||| ||||||    
T  13489278 gaggttgactgaaagggtaacgacgtaagcttttaataatttaaagaaccaatctaaaactttaaaaatttaaaggactgatccggtacaaacgtaaaa 13489376  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 13488978 - 13488870
Alignment:
Q  97 gaggttgattgaaagggtaatggcgtaaacttttaataatttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaat 196  Q
    |||||||| ||||||| ||| | | |||  ||| ||||| ||||||||||||| | |||||||||||| |||||  || |||||| |||||| || |||     
T  13488978 gaggttgactgaaaggttaacgacataatttttcaataacttaaaggaccaatatgaaactttaaaaaattaaaaaacttatccgttacaaacgtgaaac 13488879  T
Q  197 ttaaaggac 205  Q
    |||||||||    
T  13488878 ttaaaggac 13488870  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 4603536 - 4603461
Alignment:
Q  129 ttaataatttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaatttaaagga 204  Q
    |||| ||||||||||||| ||||||||| ||| ||| |||||| || ||||||| ||||| || ||| ||||||||    
T  4603536 ttaaaaatttaaaggacctatctaaaaccttagaaacttaaaggacctatccgaaacaaacgtgaaacttaaagga 4603461  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 11471835 - 11471917
Alignment:
Q  137 ttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaatttaaaggacatgaggagatattt 219  Q
    |||||||| |||| ||||| || |||||||||||| |   |||| |||||||||||||| |||||||||   |||||||||||    
T  11471835 ttaaaggatcaatttaaaatttaaaaaatttaaaggatcgatccaatacaaatgtaaaacttaaaggaccctaggagatattt 11471917  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 32702408 - 32702513
Alignment:
Q  97 gaggttgattgaaagggtaatggcgtaaacttttaataatttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaat 196  Q
    |||||||||| ||||||||| | | ||| |||||||||| ||||||||||||| |||||||||||||| |||||| ||  ||||| |||||| ||||||     
T  32702408 gaggttgattaaaagggtaacgacataagcttttaataacttaaaggaccaatttaaaactttaaaaacttaaaggactgatccggtacaaacgtaaaac 32702507  T
Q  197 ttaaag 202  Q
    ||||||    
T  32702508 ttaaag 32702513  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 32702106 - 32701998
Alignment:
Q  97 gaggttgattgaaagggtaatggcgtaaacttttaataatttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaat 196  Q
    ||||||||||||||||||||   | ||| |||||| ||| ||||||||||||| | |||||||||||| |||||| ||  ||||| ||||||||  |||     
T  32702106 gaggttgattgaaagggtaacaacataagcttttagtaacttaaaggaccaatgtgaaactttaaaaacttaaaggactgatccggtacaaatgcgaaac 32702007  T
Q  197 ttaaaggac 205  Q
    |||||||||    
T  32702006 ttaaaggac 32701998  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 5244028 - 5243991
Alignment:
Q  134 aatttaaaggaccaatctaaaactttaaaaatttaaag 171  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  5244028 aatttaaaggacctatctaaaactttaaaaatttaaag 5243991  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 14336706 - 14336638
Alignment:
Q  137 ttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaatttaaaggac 205  Q
    |||||||||| |||| |||||||||||| |||||| || |||| || ||||| |||||| |||||||||    
T  14336706 ttaaaggacctatctgaaactttaaaaacttaaaggacctatctgaaacaaacgtaaaacttaaaggac 14336638  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 5243978 - 5243946
Alignment:
Q  139 aaaggaccaatctaaaactttaaaaatttaaag 171  Q
    |||||||| ||||||||||||||||||||||||    
T  5243978 aaaggacctatctaaaactttaaaaatttaaag 5243946  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 42620540 - 42620469
Alignment:
Q  134 aatttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaatttaaaggac 205  Q
    ||||||||||||  |||| |||  ||||||| |||||| ||||||| || ||||| ||||||||||||||||    
T  42620540 aatttaaaggacttatctgaaatcttaaaaacttaaaggacatatctgaaacaaacgtaaaatttaaaggac 42620469  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 29218485 - 29218417
Alignment:
Q  137 ttaaaggaccaatctaaaactttaaaaatttaaagtacatatccgatacaaatgtaaaatttaaaggac 205  Q
    |||||||||| || |||||| |||||||||||||| || ||||||| |||||  | ||| |||||||||    
T  29218485 ttaaaggacctatataaaaccttaaaaatttaaaggacctatccgaaacaaacttcaaacttaaaggac 29218417  T

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