View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15952_low_16 (Length: 236)
Name: NF15952_low_16
Description: NF15952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15952_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 8945110 - 8945283
Alignment:
| Q |
50 |
tctaacattttatattcaagtaaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgt |
149 |
Q |
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| T |
8945110 |
tctaacattttatattcaagtaaagttaagtcaacatgaacaaacattttaaaaaaa-cattaactagatcaaattcaaacattaactaattaaacctgt |
8945208 |
T |
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| Q |
150 |
ttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcatctcac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8945209 |
ttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctcac |
8945283 |
T |
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Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 51855923 - 51856097
Alignment:
| Q |
50 |
tctaacattttatattcaagtaaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgt |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855923 |
tctaacattttatattcaagtaaagttaagtcaacatgaacaaacattttaaaaaaaacattaactagatcaaattcaaacattaactaattaaacctgt |
51856022 |
T |
|
| Q |
150 |
ttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcatctcac |
224 |
Q |
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| T |
51856023 |
ttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtccacctcacatcatgttcttctcac |
51856097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 24269829 - 24269886
Alignment:
| Q |
142 |
aaacctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc |
200 |
Q |
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| T |
24269829 |
aaacctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc |
24269886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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