View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15952_low_4 (Length: 456)
Name: NF15952_low_4
Description: NF15952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15952_low_4 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 230046 - 230480
Alignment:
| Q |
16 |
acatttcacttattctttgcttgcccttatgcaatgagaatctggaactggctagctaatactctaaatttcaattttcactttaacaatattgacgaaa |
115 |
Q |
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| T |
230046 |
acatttcacttattctttgcttgcccttatgcaatgagaatctagaaccggctagctaatactctaaatttcaattttcactttaacaatattgacgaaa |
230145 |
T |
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| Q |
116 |
tttggcacatctgtgatagaaggtggaaccctcagtgcaagatagtgatcaaagcagccatcatcaatgtcttatcaactatttggttttccaggaatac |
215 |
Q |
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| T |
230146 |
tttggcacatctgtgatagaaggtggaaccctcagtgcaagatagtgatcaaagcagccatcatcaatgtcttatcaactatttggttttccaggaatac |
230245 |
T |
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| Q |
216 |
---tagattcaaagataaaacaatacattggaagagtgtcatttctttaatctcttctaatgtagctttatctggtaacaactccaaagcttcatcaaac |
312 |
Q |
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| T |
230246 |
aactagattcaaagataaaacaatacattggaagagtgccatttctttaatctcttctaatgtagctttatctggtaacaactccaaagcttcatcaaac |
230345 |
T |
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| Q |
313 |
tcatcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaagaggtcatatggcatcctcctatta |
412 |
Q |
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| T |
230346 |
tcatcaatgtcggatttttctatcatcaagaagttcagagttaatattcactctcctagggctcctcagatcaaagaggtcatatggcatcctcctatta |
230445 |
T |
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| Q |
413 |
gtcattggattaaaggacatacatatggttcatct |
447 |
Q |
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| T |
230446 |
gtcattggattaaaggaaatacatatggttcatct |
230480 |
T |
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Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 290 - 447
Target Start/End: Original strand, 12487951 - 12488108
Alignment:
| Q |
290 |
acaactccaaagcttcatcaaactcatcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaaga |
389 |
Q |
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| T |
12487951 |
acaattccaaagcttcatcaaactcatcaatgtcggattttgctatcatcaagaagttcagagttaatattcaccctcctagggctcctcagatcaaaga |
12488050 |
T |
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| Q |
390 |
ggtcatatggcatcctcctattagtcattggattaaaggacatacatatggttcatct |
447 |
Q |
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| T |
12488051 |
ggtcatatggcaccctcctattagtcattggattaaaggaaatacagatggttcatct |
12488108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 413
Target Start/End: Original strand, 21851089 - 21851287
Alignment:
| Q |
215 |
ctagattcaaagataaaacaatacattggaagagtgtcatttctttaatctcttctaatgtagctttatctggtaacaactccaaagcttcatcaaactc |
314 |
Q |
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| T |
21851089 |
ctagattcaaggataaacaaattcactggaagtctgcaatctctttaatttcctcaaatgtgactttgtctggtaacaactctaaagctttttctaattc |
21851188 |
T |
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| Q |
315 |
atcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaagaggtcatatggcatcctcctattag |
413 |
Q |
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| T |
21851189 |
ttctatgactgattttgttatcatcaagaagtttagagtgaacattcatcctccaagagcccctcagatcaaggaggttttgtggcagcctcccattag |
21851287 |
T |
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Back To:
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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 70658 - 70716
Alignment:
| Q |
100 |
aacaatattgacgaaatttggcacatctgtgatagaaggtggaaccctcagtgcaagat |
158 |
Q |
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| T |
70658 |
aacaatatagaagatatttggcacatccgtgatagatggtggagtcctcagtgcaagat |
70716 |
T |
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