View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15952_low_6 (Length: 378)
Name: NF15952_low_6
Description: NF15952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15952_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 42400250 - 42399891
Alignment:
| Q |
1 |
caattaattcagtcaaaaacacataataatatggaaataccaacctatcctgatatatgccaaatacaccagctgcatgtatgagatcataagttctagg |
100 |
Q |
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| T |
42400250 |
caattaattcagtcaaaaacacataataatatggaaataccaacctatcctgatatatgccaaatacaccagctgcatgtatgagatcataagttctagg |
42400151 |
T |
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| Q |
101 |
gtaagttgagaaagcttcacaccaatcatggtaagtcccaatgaaacctctttcaaagattgcaccaagagtatcatgagctgaatttgaaggaacaaca |
200 |
Q |
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| T |
42400150 |
gtaagttgagaaagcttcacaccaatcatggtaagtcccaatgaaacctctttcaaagattgcaccaagagtatcatgagctgaatttgaaggaacaaca |
42400051 |
T |
|
| Q |
201 |
ttcataacccaaactggaaattttaataatgctgctgcaaatccaccaaggtaagcattcatatcaataatgtttctatatcttccttgagcaataggag |
300 |
Q |
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| T |
42400050 |
ttcataacccaaactggaaattttaataatgctgctgcaaatccaccaaggtaagcattcatatcaataatgtttctatatcttccttgagcaataggag |
42399951 |
T |
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| Q |
301 |
tgatatgcttgtaatgtgacattctgtccttccataattcattgtccttttgaaatttct |
360 |
Q |
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| T |
42399950 |
tgatatgcttgtaatgtgacattctgtccttccataattcattgtccttttgaaatttct |
42399891 |
T |
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Back To:
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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 503625 - 503714
Alignment:
| Q |
192 |
ggaacaacattcataacccaaactggaaattttaataatgctgctgcaaatccaccaaggtaagcattcatatcaataatgtttctatat |
281 |
Q |
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| T |
503625 |
ggaacaacattcataacccaaactggatatttcaccaatgcagctgcaaatccaccaaagccagcattcatatccataacatttctatat |
503714 |
T |
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