View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15952_low_8 (Length: 358)
Name: NF15952_low_8
Description: NF15952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15952_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 153 - 349
Target Start/End: Complemental strand, 2369988 - 2369793
Alignment:
| Q |
153 |
tataagcgtggttgtagttctttctcttttccccctattgtttgtgttaacaatgtagagaattagagagaataagaaaagaggctaacaaaagcgatta |
252 |
Q |
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| T |
2369988 |
tatatgcgtggttgtagttctttttcttttcccc-tattgtttgtgttaacaatgttgagaattagagagaataagaaaagaggctaacaaaagcgatta |
2369890 |
T |
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| Q |
253 |
gggttttcatctaagaaaacaacaactagggttttgttggaatatcaattgcattgctttccaaaataaaagtttggatatatatagtataatctac |
349 |
Q |
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| T |
2369889 |
gggttttcctctaagaaaacaacaaatagggttttgttggaatatcaattgcattgcttttcaaaataagagtttggatatatatagtaaaatctac |
2369793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 2370163 - 2370025
Alignment:
| Q |
16 |
caaaaacaagttcccattannnnnnnaattttatcgtacctagattttgagactttggctttgacagcatcattcatattcttcttttttctgtcatcac |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2370163 |
caaaaacaagttcccattatttttttaattttatcgtacctagattttgagactttggctttgacagcatcattcctattcttcttttttctgtcatcac |
2370064 |
T |
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| Q |
116 |
ttgtctttctttcttgtttggaacaagaagtttccatta |
154 |
Q |
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| T |
2370063 |
ttgtctttctttcttgtttggaacaagaagtttccatta |
2370025 |
T |
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