View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15953_high_2 (Length: 228)

Name: NF15953_high_2
Description: NF15953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15953_high_2
NF15953_high_2
[»] chr5 (5 HSPs)
chr5 (31-212)||(25092797-25092978)
chr5 (31-212)||(25150767-25150948)
chr5 (31-123)||(25226948-25227040)
chr5 (31-123)||(25291105-25291197)
chr5 (39-123)||(25726179-25726263)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 25092978 - 25092797
Alignment:
Q  31 tatgcatacactaagcatttaattcattcaccaaaattacaaccataatttaaatttcaagttcaaattgagtttctaaagacatttgtatttttgtaga 130  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  25092978 tatgcatacactaagcattcaattcatacactaaaattacaaccataatttaaatttcaagttcaaactgagtttctaaagtcatttgtatttttgtaga 25092879  T
Q  131 ttttgagtggaaggcataagctgggaacatgtattgagattaaatttgtccactcaaagtgtgctgaacttaaagaattatt 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| |||||    
T  25092878 ttttgagtggaaggcataagctgggaacatgtatttagattaaatttgtccactcaaagtatggtgaacttaaagacttatt 25092797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 25150948 - 25150767
Alignment:
Q  31 tatgcatacactaagcatttaattcattcaccaaaattacaaccataatttaaatttcaagttcaaattgagtttctaaagacatttgtatttttgtaga 130  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  25150948 tatgcatacactaagcattcaattcatacactaaaattacaaccataatttaaatttcaagttcaaactgagtttctaaagtcatttgtatttttgtaga 25150849  T
Q  131 ttttgagtggaaggcataagctgggaacatgtattgagattaaatttgtccactcaaagtgtgctgaacttaaagaattatt 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| |||||    
T  25150848 ttttgagtggaaggcataagctgggaacatgtatttagattaaatttgtccactcaaagtatggtgaacttaaagacttatt 25150767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 25227040 - 25226948
Alignment:
Q  31 tatgcatacactaagcatttaattcattcaccaaaattacaaccataatttaaatttcaagttcaaattgagtttctaaagacatttgtattt 123  Q
    |||||||||||||||||||  |||||||||| ||||| ||||| || |||||||||||||||| |||| |||||||||||  |||||||||||    
T  25227040 tatgcatacactaagcattacattcattcactaaaatcacaacaatgatttaaatttcaagtttaaatcgagtttctaaactcatttgtattt 25226948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 25291197 - 25291105
Alignment:
Q  31 tatgcatacactaagcatttaattcattcaccaaaattacaaccataatttaaatttcaagttcaaattgagtttctaaagacatttgtattt 123  Q
    |||||||||||||||||||  |||||||||| ||||| ||||| || |||||||||||||||| |||| |||||||||||  |||||||||||    
T  25291197 tatgcatacactaagcattacattcattcactaaaatcacaacaatgatttaaatttcaagtttaaatcgagtttctaaactcatttgtattt 25291105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 25726179 - 25726263
Alignment:
Q  39 cactaagcatttaattcattcaccaaaattacaaccataatttaaatttcaagttcaaattgagtttctaaagacatttgtattt 123  Q
    ||||||||||| ||||||||||| ||| |  |||| || ||||||||||||||||||||  |||||||||||  |||||||||||    
T  25726179 cactaagcattcaattcattcactaaattcgcaacaatgatttaaatttcaagttcaaaccgagtttctaaactcatttgtattt 25726263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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