View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15953_low_1 (Length: 603)
Name: NF15953_low_1
Description: NF15953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15953_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 11 - 587
Target Start/End: Complemental strand, 46864337 - 46863761
Alignment:
| Q |
11 |
aatgaaaataacatacatccaaccactataatttgtacatcatataacaagaaaatcagaaaacatattttctatgattgaacaaaacaaaaaacagtaa |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46864337 |
aatgaaaataacatacattcaaccactataatttgtacatcatataacaagaaaatcagaaaacatattttctatgattgaacaaaacaaaaaacagtaa |
46864238 |
T |
|
| Q |
111 |
aacagaattatgtttgataaaaccaagaccaataatcaaaaatgggaatagggaaatcaacacaaagatgagttattatcacctgcttctccatgagaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46864237 |
aacagaattatgtttgataaaaccaagaccaataatcaaaaaagggaaaagggaaatcaacacaaagatgagttattattacctgcttctccatgagaaa |
46864138 |
T |
|
| Q |
211 |
agtgacagtcctccccaaagggacagctcccttgatgctgccaacggaaacacatattattcttccaataagtgcccctagctggcttgttcacagccct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46864137 |
agtgacagtcctccccaaagggacagctcccttgatgctgccaacggaaacacatattattcttccaataagtgcccctagctggcttgttcacagccct |
46864038 |
T |
|
| Q |
311 |
aatgtcatccccaaatgattttgaagaaccaatagtcccaatgcttatagaagaacactctcctgacttccaagaatgatccctagacttagcaggatcc |
410 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46864037 |
aatgccatccccaaatgattttgaagaaccaatagtcccaatgcttatagaagaacactctcctgacttccaagaatgatccctagacttagcaggatcc |
46863938 |
T |
|
| Q |
411 |
tcatgacgaaaattacacttactaccaaagaaacatttctcaccattggaatacatcctgcatagcttcatcttgtgaatgaatttttgatcttcctccc |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46863937 |
tcatgacgaaaattacacttactaccaaagaaacatttctcaccattggaatacatcctgcatagcttcatcttgtgaatgaatttttgatcttcctccc |
46863838 |
T |
|
| Q |
511 |
aatttctcagctgcttctgttcgtcgttgcaaggactaactagctcctgccaatttcctggtggctgtcttagttct |
587 |
Q |
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| T |
46863837 |
aatttctcagctgcttctgttcgtcgttgcaaggactaactagctccagccaatttcctggtggctgtcttagttct |
46863761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 128 - 515
Target Start/End: Complemental strand, 46899351 - 46898949
Alignment:
| Q |
128 |
taaaaccaagaccaataatcaaaaatgggaatagggaaatcaacacaaagatgagttattatcacctgcttctccatgagaaaagtgacagtcctcccca |
227 |
Q |
| |
|
||||| ||| |||| ||||||||| |||| | |||||| |||| | |||||||||| || ||||||||||||||||| ||||| |||| ||||||| |
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| T |
46899351 |
taaaatcaaaaccattaatcaaaatagggagaatggaaattaacaaacagatgagttaacattacctgcttctccatgagcaaagtcacaggtctcccca |
46899252 |
T |
|
| Q |
228 |
aagggacagctcccttgatgctgccaacggaaacacatattattcttccaataagtgcccctagctggcttgttcacagccctaatgtcatcc------- |
320 |
Q |
| |
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||||||||||||||| ||||||||| | ||||| ||| |||||||||||| | ||| |||||||||||||||||||||||| | ||| |
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| T |
46899251 |
aagggacagctccctgtatgctgccattg---acacagcttagtcttccaataagcactccttgctggcttgttcacagccctaatgccttccaaattgt |
46899155 |
T |
|
| Q |
321 |
-----------ccaaatgattttgaagaaccaatagtcccaatgcttatagaagaacactctcctgacttccaagaatgatccctagacttagcaggatc |
409 |
Q |
| |
|
||||| || |||| |||||||||| | |||| |||||| | ||||||||||| || ||||||||| ||||||| || |||||||||| |
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| T |
46899154 |
tagaaccatacccaaaagactttggagaaccaatatttccaacgcttattgcagaacactctcttgttttccaagaagcatccctaaacctagcaggatc |
46899055 |
T |
|
| Q |
410 |
ctcatgacgaaaattacacttactaccaaagaaacatttctcaccattggaatacatcctgcatagcttcatcttgtgaatgaatttttgatcttcctcc |
509 |
Q |
| |
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||||||| |||| |||||||| |||| | ||||| ||||||| || ||||| || | || ||||||||||||||||||| |||||||||||| ||| |
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| T |
46899054 |
ctcatgaagaaagctacacttatcaccataaggacattcctcaccaatgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
46898955 |
T |
|
| Q |
510 |
caattt |
515 |
Q |
| |
|
|||||| |
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|
| T |
46898954 |
caattt |
46898949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 22691750 - 22691790
Alignment:
| Q |
271 |
tcttccaataagtgcccctagctggcttgttcacagcccta |
311 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
22691750 |
tcttccagtaagtgccccttgctggcttgttcacagaccta |
22691790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 19846037 - 19845997
Alignment:
| Q |
271 |
tcttccaataagtgcccctagctggcttgttcacagcccta |
311 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
19846037 |
tcttccagtaagtgccccttgctggcttgttcacagaccta |
19845997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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