View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_high_1 (Length: 736)

Name: NF15954_high_1
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_high_1
NF15954_high_1
[»] chr3 (1 HSPs)
chr3 (19-727)||(33159989-33160698)
[»] chr2 (1 HSPs)
chr2 (209-246)||(25635129-25635166)


Alignment Details
Target: chr3 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 19 - 727
Target Start/End: Complemental strand, 33160698 - 33159989
Alignment:
Q  19 attgtgtcaatgtcatgtcggtgttggtgttaaacatgtgtcagacaccggatacacatttaatcggttggtgctgcataagtccaattgattgaaatga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33160698 attgtgtcaatgtcatgtcggtgttggtgttaaacatgtgtcagacaccggatgcacatttaatcggttggtgctgcataagtccaattgattgaaatga 33160599  T
Q  119 tgcaaagctatgtagcaatgacattgcgtattgaaggcatgtttggtgtccgacacgagactgacgcatgtggatacattcaaaggatttattttctcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33160598 tgcaaagctatgtagcaatgacattgcgtattgaaggcatgtttggtgtccgacacgagactgacgcatgtggctacattcaaaggatttattttctcaa 33160499  T
Q  219 aatattatcggtgtcgatgtgttagagttgtgtccaccgttctctgctttatagatgcaaattgnnnnnnn-ttgcatattgaaatgctttcttgttatt 317  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  33160498 aatattatcggtgtcgatgcgttagagttgtgtccaccgttctctgctttatagatgcaaattgaaaaaaaattgcatattgaaatgctttcttgttatt 33160399  T
Q  318 agaatttatgacgttttgtttttaatttgcagtaaggattggtatagtctatatactatctgcttttgtgggtgccttaatggcatctctttttcttcaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160398 agaatttatgacgttttgtttttaatttgcagtaaggattggtatagtctatatactatctgcttttgtgggtgccttaatggcatctctttttcttcaa 33160299  T
Q  418 aacatccctgctgttggttcatctggtgctctatttggattactaggagcattgctttcagaacttgtttggaactggaaatatcataccaaaaaggtgc 517  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160298 aacatccctgttgttggttcttctggtgctctatttggattactaggagcattgctttcagaacttgtttggaactggaaatatcataccaaaaaggtgc 33160199  T
Q  518 ttcttagtttttcacctcatagctgtttctcattgttaggcatgattgatttttgatcaattatttctttggtggaatgcagatttcagaagtagcatca 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  33160198 ttcttagtttttcacctcatagctgtttctcattgttaggcatgattgatttttgatcaattttttctttggtggaatgcagatttcagaagtagcatct 33160099  T
Q  618 ttcgtctttatctttgtgtgcaacttcctccttggttttctgccttatgtagacaatttttcaagcattggaggttttatatcaggattcctccttggaa 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160098 ttcgtctttatctttgtgtgcaacttcctccttggttttctgccttatgtagacaatttttcaagcattggaggttttatatcaggattcctccttggaa 33159999  T
Q  718 ctgttcttct 727  Q
    ||||||||||    
T  33159998 ctgttcttct 33159989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 25635129 - 25635166
Alignment:
Q  209 attttctcaaaatattatcggtgtcgatgtgttagagt 246  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  25635129 attttatcaaaatattatcggtgtcgatatgttagagt 25635166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University