View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15954_high_10 (Length: 484)
Name: NF15954_high_10
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_high_10 |
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| [»] scaffold0568 (4 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0576 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 2149 - 2442
Alignment:
| Q |
17 |
atgaagacgtctttgctgattgtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattac |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2149 |
atgaagacgtctttgctgattgtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattac |
2248 |
T |
|
| Q |
117 |
tttgtacttcttaataacttattgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatg |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2249 |
tttgtacttcttagtaacttattgtttcttgaagagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatataactcccaaaaatg |
2348 |
T |
|
| Q |
217 |
tggttataattgcaaaattttgacaggttctggnnnnnnngtgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcg |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2349 |
tggttataattgcaaaattttgacaggttctggtttttttgtgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcg |
2442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 8751 - 9044
Alignment:
| Q |
17 |
atgaagacgtctttgctgattgtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattac |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8751 |
atgaagacgtctttgctgattgtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattac |
8850 |
T |
|
| Q |
117 |
tttgtacttcttaataacttattgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatg |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8851 |
tttgtacttcttagtaacttattgtttcttgaagagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatataactcccaaaaatg |
8950 |
T |
|
| Q |
217 |
tggttataattgcaaaattttgacaggttctggnnnnnnngtgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8951 |
tggttataattgcaaaattttgacaggttctggtttttttgtgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcg |
9044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 373 - 484
Target Start/End: Original strand, 2505 - 2616
Alignment:
| Q |
373 |
ggttcagcacgtgttggtgtggttgggggcttggtttggtgtggtgttatgcatagggggtcattgttcttgtccggctgcctttccggatagtttttgg |
472 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2505 |
ggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggtgttatgcatagggggtcattgttcttgtccggctgcctttccggatagtttttgg |
2604 |
T |
|
| Q |
473 |
gtctttgtatac |
484 |
Q |
| |
|
|||||||||||| |
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|
| T |
2605 |
gtctttgtatac |
2616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 373 - 484
Target Start/End: Original strand, 9107 - 9218
Alignment:
| Q |
373 |
ggttcagcacgtgttggtgtggttgggggcttggtttggtgtggtgttatgcatagggggtcattgttcttgtccggctgcctttccggatagtttttgg |
472 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9107 |
ggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggtgttatgcatagggggtcattgttcttgtccggctgcctttccggatagtttttgg |
9206 |
T |
|
| Q |
473 |
gtctttgtatac |
484 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9207 |
gtctttgtatac |
9218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 17060184 - 17060464
Alignment:
| Q |
28 |
tttgctgattgtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttct |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17060184 |
tttgctgattgtggttggaattgttgagagaattcaaagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttct |
17060283 |
T |
|
| Q |
128 |
taataacttattgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataatt |
227 |
Q |
| |
|
|| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17060284 |
tagtaacttattgtttcttgaagagcatggcaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataatt |
17060383 |
T |
|
| Q |
228 |
gcaaaattttgacaggttctggnnnnnnngtgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttagggg |
308 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17060384 |
gcaaaattttgaccggttatggtttttttgtgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttagggg |
17060464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 373 - 484
Target Start/End: Original strand, 17060530 - 17060640
Alignment:
| Q |
373 |
ggttcagcacgtgttggtgtggttgggggcttggtttggtgtggtgttatgcatagggggtcattgttcttgtccggctgcctttccggatagtttttgg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
17060530 |
ggttcagcacgtgttggtgtggttgggggcttggtttggtgcggtgttatgcatagggggtcattgttcttgtctggctgcctttccggatag-ttttgg |
17060628 |
T |
|
| Q |
473 |
gtctttgtatac |
484 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17060629 |
gtctttgtatac |
17060640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 18198940 - 18198984
Alignment:
| Q |
85 |
tttaagtatttaagtgtttacactgacattactttgtacttctta |
129 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
18198940 |
tttaaggatttaagcgtttacactgacattattttgtacttctta |
18198984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 373 - 484
Target Start/End: Original strand, 48223997 - 48224108
Alignment:
| Q |
373 |
ggttcagcacgtgttggtgtggttgggggcttggtttggtgtggtgttatgcatagggggtcattgttcttgtccggctgcctttccggatagtttttgg |
472 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48223997 |
ggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggcgttatgcgtagggggtcattgttcttgtccggctgcctttccggatagtttttgg |
48224096 |
T |
|
| Q |
473 |
gtctttgtatac |
484 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48224097 |
gtctttgtatac |
48224108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 48223874 - 48223926
Alignment:
| Q |
258 |
tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48223874 |
tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaagggcg |
48223926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 20264808 - 20264855
Alignment:
| Q |
92 |
atttaagtgtttacactgacattactttgtacttcttaataacttatt |
139 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
20264808 |
atttaagtggttacactgacattattttgtacttcttagtagcttatt |
20264855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 29158097 - 29158190
Alignment:
| Q |
136 |
tattgtttcttgaagagtatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgc |
229 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
29158097 |
tattgtttcttcaagagcaaggtaatgcattggaagcctacctgttgccaatatttgacccaaatatatctcccagaaatgtggctataattgc |
29158190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 28658640 - 28658687
Alignment:
| Q |
92 |
atttaagtgtttacactgacattactttgtacttcttaataacttatt |
139 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
28658640 |
atttaagtggttacactgacattattttgtacttcttagtagcttatt |
28658687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 4537 - 4591
Alignment:
| Q |
85 |
tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
4537 |
tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt |
4591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 3734086 - 3734140
Alignment:
| Q |
85 |
tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
3734086 |
tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt |
3734140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 2752009 - 2751955
Alignment:
| Q |
85 |
tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
2752009 |
tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt |
2751955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 15359553 - 15359607
Alignment:
| Q |
85 |
tttaagtatttaagtgtttacactgacattactttgtacttcttaataacttatt |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
15359553 |
tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt |
15359607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 288857 - 288813
Alignment:
| Q |
85 |
tttaagtatttaagtgtttacactgacattactttgtacttctta |
129 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
288857 |
tttaaggatttaagcgtttacactgacattattttgtacttctta |
288813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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