View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_high_11 (Length: 478)
Name: NF15954_high_11
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 41 - 478
Target Start/End: Original strand, 35045411 - 35045848
Alignment:
| Q |
41 |
actaaaataagagaaaatgatacattatttcactaataattgtatgacacgttttttaagaagaatctcaaatatataagctaattggataagctattag |
140 |
Q |
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| T |
35045411 |
actaaaataagagaaaatgatacattttttcactaataattgtatgacacgttttttaagaagaatctcaaatatataagctaattggataagctattag |
35045510 |
T |
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| Q |
141 |
tcattttcattgagggtcagaagtcattctcaaactcttaaaagattatattttgtgttggctattgcaacaaactctagaaggtgcaggaaaaaatatt |
240 |
Q |
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| T |
35045511 |
tcattttcattgagggtcagaagtcattctcaaactcttaaaagattatattttgtgttggctattgcaacaaactctagaaggtgcaggaaaaaatatt |
35045610 |
T |
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| Q |
241 |
aatcaatcaaatagaacctaagcacaagccaaccaaaaggacaagttttttcaaagagaatatgatctagctgtatttgacaatgattctaaactggaat |
340 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045611 |
aatcaatcaaacagaacctaagcacaagccaaccaaaaggacaagttttttcaaagagaatatgatctagctgtatttgacaatgattctaaactggaat |
35045710 |
T |
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| Q |
341 |
gaattagtgacagcaacatgaatgtccttttatcttagggacattcagaaagtgacattaattgacaaatagtgacatcatagtaaaacttacatcaact |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045711 |
gaattagtgacagcaacatgaatgtccttttatcttagggacattcagaaagtgacattaattgacaaatagtgacatcatagtaaaacttacatcaact |
35045810 |
T |
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| Q |
441 |
ctatgatccttttcctgagatgaatctgaaacctgcaa |
478 |
Q |
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| T |
35045811 |
ctatgatccttttcctgagatgaatctgaaacctgcaa |
35045848 |
T |
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