View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_high_13 (Length: 472)
Name: NF15954_high_13
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 456
Target Start/End: Complemental strand, 18289453 - 18289006
Alignment:
| Q |
10 |
catcatcaaaaaataggacaaattgatatcttcataggcttttgaccaattatccaagtttactgcaacctctttaatcatgctatatatttgagtnnnn |
109 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18289453 |
catcataaaaaaataggataaattgatatcttcataggcttttgaccaattatccaagtttactgcaacctctttaatcatgctatatatttgagtatag |
18289354 |
T |
|
| Q |
110 |
nnn-taacctcttcatatacttcatttctccaactaagatgtatttccaaaaccttattcaaatgtggcttatactcatcactaagaagcttattgcaat |
208 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18289353 |
aaaataacctcttcatataattcatttctccaactaagatgtatttccaaaaccttattcaaatgtggcttatactcatcactaagaagcttattgcaat |
18289254 |
T |
|
| Q |
209 |
aatcagtaacaaagcttaccagcttaggaacacttccatctgagggaggacaagttggtctttgaaacttcacttgttctgaaagttgcaagaatatctc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18289253 |
aatcagtaacaaagcttaccagcttaggaacacttccatctgagggaggacaagttggtctttgaaatttcacttgttctgaaagttgcaagaatatctc |
18289154 |
T |
|
| Q |
309 |
acttacaccattaacaactcttgtgacaagatcctttgtaacaattctaatttcttcacaagcttctcctctaaaaagttgattaaattttagtctgaga |
408 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18289153 |
acttacaccattaacaactcttgtgataagatcctttgtaacaattctaatttcttcacaagcttctcctctaaaaagttgattaaattttagtctgaga |
18289054 |
T |
|
| Q |
409 |
ccattcaatactttaaacattgacaacaaattcaacaacttgaaagga |
456 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18289053 |
ccattcaatattttaaacattgacaacaaattcaacaacttgaaagga |
18289006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 456
Target Start/End: Complemental strand, 1478440 - 1477993
Alignment:
| Q |
10 |
catcatcaaaaaataggacaaattgatatcttcataggcttttgaccaattatccaagtttactgcaacctctttaatcatgctatatatttgagtnnnn |
109 |
Q |
| |
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|||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||| || |||||||| || ||||| ||||||||||||||| |
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| T |
1478440 |
catcataaaaaaatatgacaaatttatatcttcataggcttttgaccaatcatccaaattaactgcaacttccttaattatgctatatatttgaccaaca |
1478341 |
T |
|
| Q |
110 |
nnn-taacctcttcatatacttcatttctccaactaagatgtatttccaaaaccttattcaaatgtggcttatactcatcactaagaagcttattgcaat |
208 |
Q |
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| T |
1478340 |
aaaataccctcttcaaatagttcatttctccaactaagatatatttccaaaaccttattcaattgtggcttatactcatcactaagaagcctattacaat |
1478241 |
T |
|
| Q |
209 |
aatcagtaacaaagcttaccagcttaggaacacttccatctgagggaggacaagttggtctttgaaacttcacttgttctgaaagttgcaagaatatctc |
308 |
Q |
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|||| || ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
1478240 |
aatcggtgacaaaacttaccaatttaggaacacttccatctgagggaggacatgttggtctttgcaacttcacttgttctgaaagtagcaagaatatctc |
1478141 |
T |
|
| Q |
309 |
acttacaccattaacaactcttgtgacaagatcctttgtaacaattctaatttcttcacaagcttctcctctaaaaagttgattaaattttagtctgaga |
408 |
Q |
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||| |||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | | |
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| T |
1478140 |
actagcaccattaacaattcttgtgataagatcctttgtcacaattctaattctttcacaagcttcccctctaaaaagttgattaaattttagtcttaaa |
1478041 |
T |
|
| Q |
409 |
ccattcaatactttaaacattgacaacaaattcaacaacttgaaagga |
456 |
Q |
| |
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||||||| ||||| |||||||||||||| ||||||| |||||||||| |
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|
| T |
1478040 |
tcattcaagactttgaacattgacaacaagttcaacagcttgaaagga |
1477993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 1483418 - 1483373
Alignment:
| Q |
290 |
aaagttgcaagaatatctcacttacaccattaacaactcttgtgac |
335 |
Q |
| |
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|||||||||||||||| ||||| ||||||| |||||||||||||| |
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|
| T |
1483418 |
aaagttgcaagaatatatcactatcaccattcacaactcttgtgac |
1483373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 14001972 - 14001923
Alignment:
| Q |
17 |
aaaaaataggacaaattgatatcttcataggcttttgaccaattatccaa |
66 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14001972 |
aaaaaataggacaaattgatatcttcgtaggcttttgaccaatcatccaa |
14001923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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