View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15954_high_16 (Length: 404)
Name: NF15954_high_16
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Complemental strand, 39309053 - 39308677
Alignment:
| Q |
10 |
aagaaaatgggttttctgttaccgactctgtttttacttcttctgttttcttcacaccaaacaaaagcttatgaatttaactccaacacaacagcaacaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39309053 |
aagaaaatgggttttctgttaccgactctgtttttacttcttctgttttcttcacaccaaacaaaagcttatgaatttaactccaacacaacagcaacaa |
39308954 |
T |
|
| Q |
110 |
ctaccatttccagtagtagtagtagta---atgagagaaaactcgctggaagatgtaactggtttcgtggcaaatgggtctatgacccttcgtatcctct |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39308953 |
ctaccatttccagtagtagtagtagtagtaatgagagaaaactcgctggaagatgtaactggtttcgtggcaaatgggtctatgacccttcgtatcctct |
39308854 |
T |
|
| Q |
207 |
ctatgatccttcttcttgtccctttatagatccacaattcaattgtcaaaagtatggcagacctgatactcagtatcagaaatatagatggcaacctttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39308853 |
ctatgatccttcttcttgtccctttatagatccacaattcaattgtcaaaagtacggcagacctgatactcagtatcagaaatatagatggcaacctttc |
39308754 |
T |
|
| Q |
307 |
acttgttctataccaaggtacatctacttcttcatttctatcatagcttttagatttagtgtatgtttggtatcagg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39308753 |
acttgttctataccaaggtacatctacttcttcatttctatcatagcttttagatttagtgtatgtttggtatcagg |
39308677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 30838788 - 30838688
Alignment:
| Q |
154 |
ggaagatgtaactggtttcgtggcaaatgggtctatgacccttcgtatcctctctatgatccttcttcttgtccctttatagatccacaattcaattgtc |
253 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||||| ||| |||| |||||||||||||| ||||| ||||||| || ||||||||||| |||||||||| |
|
|
| T |
30838788 |
ggaacatgtaacttgttccgtggcaaatgggtctacgacgcttcatatcctctctatgacccttcaacttgtcctttcatagatccacagttcaattgtc |
30838689 |
T |
|
| Q |
254 |
a |
254 |
Q |
| |
|
| |
|
|
| T |
30838688 |
a |
30838688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University