View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15954_high_18 (Length: 393)
Name: NF15954_high_18
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 34040961 - 34041308
Alignment:
| Q |
17 |
caaattcgacggtggtttcactaaggaaatatctgaaacggagcgtttagatagcatcaataactcaagtctacccttagcatccacgttccttattcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34040961 |
caaattcgacggtggtttcactaaggaaatatctgaaacggagcgtttagatagcatcaataactcaagtctacccttagcatccacgttccttattcca |
34041060 |
T |
|
| Q |
117 |
ctggaacgtaccctccttggtaacgatgttttttcattttcgggctcaatcttaggtaaatctactaggaagtaaattttcttgggcttgagttcttgat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34041061 |
ctggaacgtaccctccttggtaacgatgttttttcattttcgggctcaatcttaggtaaatctactaggaagtaaattttcttgggcttgagttcttgat |
34041160 |
T |
|
| Q |
217 |
ttggctctaagggttttgccctaagcccgaagtgttttactgcttgagaatcaagtaaaacatggttgggatagtttttgacaacttcgtttgatgttgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34041161 |
ttggctctaagggttttgccctaagcccgaagtgttttactgcttgagaatcaagtaaaacatggttgggatagtttttgacaacttcgtttgatgttgt |
34041260 |
T |
|
| Q |
317 |
tggagtttttactttgaaggtttctccatctatcttcataatcttagc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34041261 |
tggagtttttactttgaaggtttctccatctatcttcataatcttagc |
34041308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University