View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_high_19 (Length: 387)
Name: NF15954_high_19
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 36135126 - 36135495
Alignment:
| Q |
1 |
gaaggtgatccttgatggtttttcttttcagcatgaaggtgctcgtgaaacctttaaatatgctcaaaatcagatgaaaagcataacagaaaaaattata |
100 |
Q |
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| T |
36135126 |
gaaggtgatccttgatggtttttcttttcagcatgaaggtgctcgtgaaacctttaaatatgctcaaaatcagatgaaaagcataacagaaaaaattata |
36135225 |
T |
|
| Q |
101 |
tcaaaaactgcaagcatttctcaaattaagagtgatatagaaaagaagaggcatgaagcattggaaactcagagtggaagaagtgagtaaattttccttc |
200 |
Q |
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| T |
36135226 |
tcaaaaactgcaagcatttctcaaattaagagtgatatagaaaagaagaggcatgaagcattggaaactcagagtggaagaagtgagtaaattttccttc |
36135325 |
T |
|
| Q |
201 |
tttattccacttttaacannnnnnnncccaggcttttggtgataatgttctttttcttaaggaatgcatccaaaaacaagatgccgtaattgctcctgaa |
300 |
Q |
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| T |
36135326 |
tttattccac-tttaacattttttttcccaggcttttggtgataatgttctttttcttaaggaatgcatccaaaaacaagatgccgtaattgctcctgaa |
36135424 |
T |
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| Q |
301 |
caagttgctagacagaaagttgctgaactgaagtctgttttagattcagaaaagagtcagggatcagttct |
371 |
Q |
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| T |
36135425 |
caagttgctagacagaaagttgctgaactgaagtctgttttagattcagagaagagtcagggatcagttct |
36135495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 30816080 - 30816450
Alignment:
| Q |
1 |
gaaggtgatccttgatggtttttcttttcagcatgaaggtgctcgtgaaacctttaaatatgctcaaaatcagatgaaaagcataacagaaaaaattata |
100 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| ||||| | |
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| T |
30816080 |
gaaggtgattcttgatg-tttttcttttcagcatgaaggtgctcgtgaagcctttaaaggtgctcaaaatcagatgaaaattataacagaaacaattaaa |
30816178 |
T |
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| Q |
101 |
tcaaaaactgcaagcatttctcaaattaagagtgatatagaaaagaagaggcatgaagcattggaaact--cagagtggaagaagtgagtaaattttcct |
198 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||| ||| || || || |||||||||||| |||||| ||| |
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| T |
30816179 |
tcaaaaactgcaagcatttctcaaattaagagtaatatagaaaagagcaagtgtgaagcatcagaagctcacaaagcggaagaagtgagcaaatttacct |
30816278 |
T |
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| Q |
199 |
tctttattccacttttaacannnnnnnncccaggcttttggtgataatgttctttttcttaaggaatgcatccaaaaacaagatgccgtaattgctcctg |
298 |
Q |
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| T |
30816279 |
ttttgattccac-tataacattttttttcccaggcttttggtgataatgttctttttcttaaggaatgtatcaaaaaacaagatgccctgattcctcttg |
30816377 |
T |
|
| Q |
299 |
aacaagttgctagacagaaagttgctgaactgaagtctgttttagattcagaaaagagtcagggatcagttct |
371 |
Q |
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|||||| |||||||||||| ||||||||| ||||||||||||| |||||||| ||||| |||||||||||||| |
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| T |
30816378 |
aacaaggtgctagacagaaggttgctgaaatgaagtctgttttggattcagagaagagccagggatcagttct |
30816450 |
T |
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