View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_high_2 (Length: 697)

Name: NF15954_high_2
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_high_2
NF15954_high_2
[»] chr5 (17 HSPs)
chr5 (20-687)||(30048294-30048961)
chr5 (277-486)||(16596445-16596654)
chr5 (166-422)||(15065483-15065739)
chr5 (524-682)||(16597894-16598047)
chr5 (528-687)||(10275516-10275674)
chr5 (510-616)||(12019839-12019945)
chr5 (510-616)||(37659777-37659883)
chr5 (510-616)||(7102875-7102981)
chr5 (510-616)||(16795219-16795325)
chr5 (510-616)||(30696346-30696452)
chr5 (510-616)||(40370748-40370854)
chr5 (64-409)||(40370319-40370664)
chr5 (531-619)||(15065838-15065926)
chr5 (64-409)||(7102446-7102791)
chr5 (184-409)||(12020029-12020254)
chr5 (64-409)||(16795409-16795754)
chr5 (61-121)||(15065378-15065438)
[»] chr3 (7 HSPs)
chr3 (40-670)||(22930349-22930968)
chr3 (523-692)||(9698555-9698724)
chr3 (496-687)||(43548694-43548885)
chr3 (528-616)||(21848178-21848266)
chr3 (510-616)||(54170845-54170951)
chr3 (184-409)||(21848363-21848588)
chr3 (184-409)||(54170536-54170761)
[»] chr8 (14 HSPs)
chr8 (169-423)||(17784785-17785040)
chr8 (528-687)||(1287806-1287965)
chr8 (182-409)||(41946556-41946783)
chr8 (510-616)||(201185-201291)
chr8 (510-616)||(316022-316128)
chr8 (510-616)||(30409304-30409410)
chr8 (510-616)||(43810984-43811090)
chr8 (510-616)||(28647461-28647567)
chr8 (182-380)||(28647680-28647878)
chr8 (510-616)||(41946366-41946472)
chr8 (64-409)||(200756-201101)
chr8 (64-409)||(315593-315938)
chr8 (64-409)||(30408875-30409220)
chr8 (64-409)||(43810555-43810900)
[»] chr4 (7 HSPs)
chr4 (523-692)||(27187113-27187282)
chr4 (505-687)||(31355658-31355840)
chr4 (510-618)||(43682681-43682789)
chr4 (510-616)||(44148108-44148214)
chr4 (64-409)||(44148298-44148643)
chr4 (645-690)||(25171114-25171159)
chr4 (644-692)||(50912836-50912884)
[»] chr6 (10 HSPs)
chr6 (175-423)||(23254770-23255018)
chr6 (510-616)||(8319005-8319111)
chr6 (510-616)||(17880980-17881086)
chr6 (510-616)||(27571233-27571339)
chr6 (514-616)||(17160643-17160745)
chr6 (510-687)||(21414100-21414277)
chr6 (534-607)||(23254611-23254684)
chr6 (64-409)||(27570804-27571149)
chr6 (64-409)||(8318576-8318921)
chr6 (61-121)||(23255072-23255132)
[»] chr2 (8 HSPs)
chr2 (530-687)||(13270049-13270206)
chr2 (522-606)||(42515385-42515469)
chr2 (510-616)||(8051942-8052048)
chr2 (510-616)||(36671601-36671707)
chr2 (528-685)||(17256261-17256418)
chr2 (64-409)||(8052132-8052477)
chr2 (64-409)||(36671791-36672136)
chr2 (336-380)||(13269872-13269916)
[»] scaffold0044 (2 HSPs)
scaffold0044 (510-616)||(48366-48472)
scaffold0044 (64-409)||(47937-48282)
[»] chr7 (4 HSPs)
chr7 (510-616)||(27757947-27758053)
chr7 (510-616)||(7943584-7943690)
chr7 (64-409)||(7943155-7943500)
chr7 (64-409)||(27758137-27758482)
[»] chr1 (5 HSPs)
chr1 (510-616)||(26312563-26312669)
chr1 (510-616)||(39794945-39795051)
chr1 (64-409)||(26312753-26313098)
chr1 (64-409)||(39795135-39795480)
chr1 (626-691)||(25589982-25590047)
[»] scaffold0336 (1 HSPs)
scaffold0336 (644-692)||(386-434)


Alignment Details
Target: chr5 (Bit Score: 628; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 20 - 687
Target Start/End: Complemental strand, 30048961 - 30048294
Alignment:
Q  20 acatccccataatataaatcacatcttaaattactattaattttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30048961 acatccccataatataaatcacatcttaaattactattaattttccattctttctttcaataacaatctttcccatgccttttccaactagtgttctatg 30048862  T
Q  120 atatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccat 219  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048861 atatgcaagcttcaccttgctgtttcttcccgtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccat 30048762  T
Q  220 ctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcat 319  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  30048761 ctatctgacttacgactttcattattggttgttttcaccattaacaagactgcatcataatctaaatcttcttgtgaaagtttggcttgttcctcttcat 30048662  T
Q  320 tctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttctt 419  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048661 tctttacttgcttccgtttaccggtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttctt 30048562  T
Q  420 cttgccttgataattaccataacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagt 519  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048561 cttgccttgataattaccagaacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagt 30048462  T
Q  520 tacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048461 tacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga 30048362  T
Q  620 cattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 687  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  30048361 cattattaattcacgtgcctccaatgaactctgcatttcttcaattttcaaagttttcacatcctttg 30048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 277 - 486
Target Start/End: Original strand, 16596445 - 16596654
Alignment:
Q  277 taatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaactttt 376  Q
    |||||| |||||||||||  |||| |  ||||||||||||| ||||||  |||||||| ||||||||||||||| ||||||||||||||||||||  |||    
T  16596445 taatctgaatcttcttgttcaagtttaacttgttcctcttctttctttgattgcttccttttaccagtccaacactcagaagcataatgaccaaatattt 16596544  T
Q  377 cacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatcactggc 476  Q
    | |||||||||||   || ||||||||||||||| ||  |||| |||||||| ||||| ||| | |||||||||||||||||||||| ||| || || ||    
T  16596545 ctcaattataacattgtaccttcttcttatcaaaacccctctttttgccttggtaatttccaaagcctcctccttttgaagattcagctttgtcgctagc 16596644  T
Q  477 tttgttcttc 486  Q
    ||| ||||||    
T  16596645 tttcttcttc 16596654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 166 - 422
Target Start/End: Original strand, 15065483 - 15065739
Alignment:
Q  166 aaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaaca 265  Q
    ||||||| ||||||| ||||||||||||||||||||||| || |||| |||||||| ||||| ||||  || |||||| | |||||| | ||||| || |    
T  15065483 aaccaatccttattttcagtcatatgattagaacaaccagtaactaagaaccatctttctgaattgcagctctcattactagttgttgtaaccatcaata 15065582  T
Q  266 agactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatg 365  Q
    | | ||| ||| ||||| |||| ||||| | ||   | ||||||||||| ||||||||| ||||||| | |||||||| ||||||||| |||||| | ||    
T  15065583 acattgtgtcagaatctgaatcctcttgagcaatcttagcttgttcctcatcattctttgcttgctttcctttaccagaccaacattcggaagcaaagtg 15065682  T
Q  366 accaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttctt 422  Q
    | |||| |||||||| ||| ||||    |||||||||||||||||  ||||||||||    
T  15065683 atcaaaattttcacatttaaaacattgaatcttcttcttatcaaaatctttcttctt 15065739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 524 - 682
Target Start/End: Original strand, 16597894 - 16598047
Alignment:
Q  524 tttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacatt 623  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||           
T  16597894 tttgcctttcttgaaattcttcttatcataaccatctttcttcacagtttgaacttgcaaagcttgttgaatttatctttcactgcttctttc-----cc 16597988  T
Q  624 attaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatc 682  Q
    || |||||| |||| ||||||||||||| || ||||| ||| |||||||||| ||||||    
T  16597989 atcaattcatgtgcttccaaagaactcttcagttcttgaatcttcaaagttttcacatc 16598047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 528 - 687
Target Start/End: Complemental strand, 10275674 - 10275516
Alignment:
Q  528 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 627  Q
    ||||||||||| || ||| ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||| ||| ||||||||||  |  || |    
T  10275674 cctttcttgaagttatttctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatcttt-actgcttctttcagttaccatca 10275576  T
Q  628 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 687  Q
    ||||| |||| ||||| |||||||||| ||| ||||| ||||| || | |||||||||||    
T  10275575 attcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 10275516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 12019945 - 12019839
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  12019945 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 12019846  T
Q  610 ttctttc 616  Q
    |||||||    
T  12019845 ttctttc 12019839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 37659883 - 37659777
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  37659883 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 37659784  T
Q  610 ttctttc 616  Q
    |||||||    
T  37659783 ttctttc 37659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 7102875 - 7102981
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7102875 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7102974  T
Q  610 ttctttc 616  Q
    |||||||    
T  7102975 ttctttc 7102981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 16795325 - 16795219
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  16795325 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 16795226  T
Q  610 ttctttc 616  Q
    |||||||    
T  16795225 ttctttc 16795219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 30696452 - 30696346
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  |||||| |||||||||||||| | |    
T  30696452 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgc 30696353  T
Q  610 ttctttc 616  Q
    |||||||    
T  30696352 ttctttc 30696346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 40370748 - 40370854
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||| ||||| | |    
T  40370748 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatttttcattgc 40370847  T
Q  610 ttctttc 616  Q
    |||||||    
T  40370848 ttctttc 40370854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 40370319 - 40370664
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | ||||||    |||||||| |||||| ||||||||  ||||||||||||  |  | ||||     
T  40370319 ccattctttccttcaatagcaatgttccccattccttctgcaactaagactctatgatctgcaagtttcacctttgtgtttcttctagaatccacttctc 40370418  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | ||| |  ||| | || ||||||||||||||||||||||| ||||||| ||||| || ||||| |||   || |||||| | |||||| | ||||| |     
T  40370419 ttaacaatgtctgagttccagtcatatgattagaacaaccagtatctaagaaccaactttctgaattggagctctcattactagttgttgtaaccatcat 40370518  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||| | || | |||||| ||| || |||||||||  |||||| | ||||| || |||||||||| | ||||||    
T  40370519 gaataatgactcagaatctgaatcatcttgagcaattttggcttcttcttcatcattctttgattgctttcctttactagaccaacattcaaaggcataa 40370618  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  40370619 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 40370664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 619
Target Start/End: Original strand, 15065838 - 15065926
Alignment:
Q  531 ttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga 619  Q
    |||||||| |||||||||||| | ||||| |||||||  || |||||||| || |||||||||||| || ||||||| ||||| |||||    
T  15065838 ttcttgaagttctttttatcagaatcatctttcttcatggtctgaacttgcaaggcttgttgaattcatatttcactgcttctctcaga 15065926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 7102446 - 7102791
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  7102446 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 7102545  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  7102546 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 7102645  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  7102646 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 7102745  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  7102746 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 7102791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 409
Target Start/End: Complemental strand, 12020254 - 12020029
Alignment:
Q  184 gtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatcta 283  Q
    ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | ||  ||| |||||     
T  12020254 gtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgattcagaatctg 12020155  T
Q  284 aatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaatt 383  Q
    |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| ||||| || ||||| || ||||| ||    
T  12020154 aatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaaatttctcacattt 12020055  T
Q  384 ataacaacatatcttcttcttatcaa 409  Q
      ||||    ||||||||||||||||    
T  12020054 gaaacactgaatcttcttcttatcaa 12020029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 16795754 - 16795409
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  16795754 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 16795655  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  16795654 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 16795555  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  16795554 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 16795455  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  16795454 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 16795409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 15065378 - 15065438
Alignment:
Q  61 tttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgat 121  Q
    |||||| ||||||  |||||||||||||| | ||| |||| | ||||||||||||||||||    
T  15065378 tttccactctttccgtcaataacaatcttcctcattccttctgcaactagtgttctatgat 15065438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 40 - 670
Target Start/End: Original strand, 22930349 - 22930968
Alignment:
Q  40 acatcttaaattactattaattttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgc 139  Q
    ||||||| |||||| | |||| ||| |||||||| |||||||   ||||||||||| |||| | |||||| |||| ||||||   ||||||||||||||     
T  22930349 acatcttcaattacaactaatcttcaattctttccttcaatagatatctttcccatgccttctgcaactaatgttgtatgatcaacaagcttcaccttgg 22930448  T
Q  140 tgtttcttctagtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttc 239  Q
    | ||  | | ||  | ||||||||| ||| ||||||||||   |||||| || ||| | ||| || ||||||| |||||||| | ||| ||||  || ||    
T  22930449 tattcttccaaggatcgatttcttttaacaaattcttattaaaagtcatgtggttaaatcaaacagtatctaagaaccatctttttgaattgcagctctc 22930548  T
Q  240 attattggttgttttcaccattaacaagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgttta 339  Q
    | || || ||||| ||||||| ||||||||||| ||| ||||||| ||||||| || ||   | || |||||||||||||||||||||| ||||| ||||    
T  22930549 agtactgattgttgtcaccatcaacaagactgtgtcagaatctaagtcttcttttgcaatcttagcatgttcctcttcattctttactttcttcccttta 22930648  T
Q  340 ccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccat 439  Q
    |||| ||  |||||||| |||||  |  ||||||||||||||||||| ||  |   ||||||||||| ||| | ||||||||||  |||||||           
T  22930649 ccagaccggcattcagatgcatagagggcaaacttttcacaattatagcattaatccttcttcttatgaaaacatttcttcttgttttgataaa------ 22930742  T
Q  440 aacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcg-cccttagagttacttttgcctttcttgaa 538  Q
    ||| || |||||||||| |||||   || ||| || |||||||||||  |||      |||||||||||  ||||| |||||| | ||||||||||||||    
T  22930743 aacttcatccttttgaacattcaccattttcaatgactttgttcttccattt------tgaccagtttcctcccttggagttattcttgcctttcttgaa 22930836  T
Q  539 attctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcc 638  Q
     ||||| ||| || | |||||  | || | |||||||||||| ||   ||||||||||||||||||||||||||||||| |||  || |||||| |||||    
T  22930837 gttcttcttaacaaaatcatctctattaatagtttgaacttgcaattgttgttgaattgatctttcactacttctttcatacaccatcaattcatgtgcc 22930936  T
Q  639 tccaaagaactctgcatttcttcaattttcaa 670  Q
    ||||||||||| |||| ||||||||| |||||    
T  22930937 tccaaagaactatgcaattcttcaatcttcaa 22930968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 692
Target Start/End: Complemental strand, 9698724 - 9698555
Alignment:
Q  523 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 622  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  9698724 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 9698625  T
Q  623 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 692  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| ||||    
T  9698624 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct 9698555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 496 - 687
Target Start/End: Complemental strand, 43548885 - 43548694
Alignment:
Q  496 tttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaat 595  Q
    |||||||||||||  ||||||| ||  | || ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||| ||  |||||||||||    
T  43548885 tttgaccagtttcctccttagaatttttcttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttttagggcttgttgaat 43548786  T
Q  596 tgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 687  Q
    |||||||||||| ||||||||||  |  ||  ||||| |||| || || |||| ||||| ||| ||||| ||||| || | |||||||||||    
T  43548785 tgatctttcactgcttctttcagttaccatcgattcatgtgcttctaatgaacactgcaattcctcaatcttcaatgtcttcacatcctttg 43548694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 528 - 616
Target Start/End: Complemental strand, 21848266 - 21848178
Alignment:
Q  528 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 616  Q
    ||||||||||| ||||| |||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  21848266 cctttcttgaagttcttcttatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 21848178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 54170845 - 54170951
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  54170845 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 54170944  T
Q  610 ttctttc 616  Q
    |||||||    
T  54170945 ttctttc 54170951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 409
Target Start/End: Complemental strand, 21848588 - 21848363
Alignment:
Q  184 gtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatcta 283  Q
    ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | ||  ||| ||||||    
T  21848588 gtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgattcagaatcta 21848489  T
Q  284 aatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaatt 383  Q
    |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| ||||| || ||||| || ||||| ||    
T  21848488 aatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaaatttctcacattt 21848389  T
Q  384 ataacaacatatcttcttcttatcaa 409  Q
      ||||    ||||||||||||||||    
T  21848388 gaaacactgaatcttcttcttatcaa 21848363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 409
Target Start/End: Original strand, 54170536 - 54170761
Alignment:
Q  184 gtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatcta 283  Q
    ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | ||  ||| |||||     
T  54170536 gtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgattcagaatctg 54170635  T
Q  284 aatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaatt 383  Q
    |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||| || ||||| ||    
T  54170636 aatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaaatttctcacattt 54170735  T
Q  384 ataacaacatatcttcttcttatcaa 409  Q
      ||||    ||||||||||||||||    
T  54170736 gaaacactgaatcttcttcttatcaa 54170761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 169 - 423
Target Start/End: Original strand, 17784785 - 17785040
Alignment:
Q  169 caattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaaga 268  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||| |||||| | ||| || | ||||| || || |    
T  17784785 caatccttatttccagtcatatgattagaacaaccagtatctaaaaaccatctttctgaattgcaactctcattactagtttttgtaaccatcaataaca 17784884  T
Q  269 ctgtatcataatctaaatcttcttgtg-aaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgac 367  Q
    |||| | | ||||| |||||||||| | |||   | ||||||| ||| || |||||||||||||| | |||||||| ||| |||| ||||||| | ||||    
T  17784885 ctgtgtaagaatcttaatcttcttgggcaaatcttagcttgttgctcatctttctttacttgctttcctttaccagaccagcatttagaagcaaagtgac 17784984  T
Q  368 caaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttg 423  Q
    |||| || ||||| ||| |||| |  ||||||||||||||||| ||||||||||||    
T  17784985 caaaattctcacatttaaaacaccgaatcttcttcttatcaaaacctttcttcttg 17785040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 687
Target Start/End: Complemental strand, 1287965 - 1287806
Alignment:
Q  528 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 627  Q
    ||||||||||| |||||  ||||||  ||||||||||| | |||||||| |||||  ||||||| ||||||||||||||| ||||||||||  |  || |    
T  1287965 cctttcttgaagttcttcctatcattatcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctttcagttaccatca 1287866  T
Q  628 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 687  Q
    ||||| |||| || || |||||||||| ||| ||||| ||||| || | |||||||||||    
T  1287865 attcatgtgcttctaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 1287806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 182 - 409
Target Start/End: Complemental strand, 41946783 - 41946556
Alignment:
Q  182 cagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatc 281  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | ||  ||| ||||    
T  41946783 cagtcatatgattagaacaaccaatatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgactcagaatc 41946684  T
Q  282 taaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaa 381  Q
    | |||| ||||||| || | ||||||  || || |||||||||  |||||| | |||||||| |||||||||||| |||||||| ||||| || |||||     
T  41946683 tgaatcatcttgtgcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagaggcataatgtccaaatttctcacat 41946584  T
Q  382 ttataacaacatatcttcttcttatcaa 409  Q
    ||  ||||    ||||||||||||||||    
T  41946583 ttgaaacactgaatcttcttcttatcaa 41946556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 201185 - 201291
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  201185 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 201284  T
Q  610 ttctttc 616  Q
    |||||||    
T  201285 ttctttc 201291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 316022 - 316128
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  316022 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 316121  T
Q  610 ttctttc 616  Q
    |||||||    
T  316122 ttctttc 316128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 30409304 - 30409410
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  30409304 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 30409403  T
Q  610 ttctttc 616  Q
    |||||||    
T  30409404 ttctttc 30409410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 43810984 - 43811090
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  43810984 cccttagagtttttcttccctttcttgaagttcttcatatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 43811083  T
Q  610 ttctttc 616  Q
    |||||||    
T  43811084 ttctttc 43811090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 28647567 - 28647461
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||| || || | |||||||||||| |  ||||||||||||||||||||| | |    
T  28647567 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcttttttgatagtttgaacttgcatggcttgttgaattgatctttcattgc 28647468  T
Q  610 ttctttc 616  Q
    |||||||    
T  28647467 ttctttc 28647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 28647878 - 28647680
Alignment:
Q  182 cagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatc 281  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| |||   || |||||| | |||||| | ||||| |  || | ||  ||| ||||    
T  28647878 cagtcatatgattagaacaaccagtatctaagaaccaactttctgaattgtagctctcattactagttgttgtaaccatcatgaataatgactcaaaatc 28647779  T
Q  282 taaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcaca 380  Q
    | |||| ||||| | || | ||||||  || || |||||||||  |||||| | |||||||| |||||||||||| |||||||| ||||| || |||||    
T  28647778 tgaatcatcttgcgcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagaggcataatgtccaaatttctcaca 28647680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 41946472 - 41946366
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || |||||||| || ||||   ||||| | ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  41946472 cccttagagtttttcttccctttcttaaagttctccctatcacaatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgc 41946373  T
Q  610 ttctttc 616  Q
    |||||||    
T  41946372 ttctttc 41946366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 200756 - 201101
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  200756 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 200855  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  200856 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 200955  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  200956 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 201055  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  201056 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 201101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 315593 - 315938
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  315593 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 315692  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  315693 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 315792  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  315793 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 315892  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  315893 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 315938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 30408875 - 30409220
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  30408875 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 30408974  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  30408975 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 30409074  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  30409075 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 30409174  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  30409175 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 30409220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 43810555 - 43810900
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  43810555 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 43810654  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  43810655 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 43810754  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  43810755 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 43810854  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  43810855 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 43810900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 692
Target Start/End: Complemental strand, 27187282 - 27187113
Alignment:
Q  523 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 622  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  27187282 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 27187183  T
Q  623 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 692  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| ||||    
T  27187182 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct 27187113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 505 - 687
Target Start/End: Complemental strand, 31355840 - 31355658
Alignment:
Q  505 tttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttc 604  Q
    |||| |||||||||||  | || | ||||||||| |||||  ||||||  |||| |||||| | ||||||||||||||  ||||||||||||||||||||    
T  31355840 tttcccccttagagtttttcttccttttcttgaagttcttcctatcattatcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttc 31355741  T
Q  605 actacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 687  Q
    ||| ||| ||||||  |  || |||||| |||| ||||| |||||||||| ||||||||| ||||| || | |||||||||||    
T  31355740 acttcttgtttcagttaccatcaattcatgtgcttccaatgaactctgcaattcttcaatcttcaatgtcttcacatcctttg 31355658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 43682681 - 43682789
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || |||||||| || |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| |    
T  43682681 cccttagagtttttcttccctttctttaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgc 43682780  T
Q  610 ttctttcag 618  Q
    |||||||||    
T  43682781 ttctttcag 43682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 44148214 - 44148108
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  44148214 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 44148115  T
Q  610 ttctttc 616  Q
    |||||||    
T  44148114 ttctttc 44148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 44148643 - 44148298
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  44148643 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 44148544  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  44148543 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 44148444  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  44148443 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 44148344  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  44148343 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 44148298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 645 - 690
Target Start/End: Complemental strand, 25171159 - 25171114
Alignment:
Q  645 gaactctgcatttcttcaattttcaaagtttgcacatcctttgctt 690  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  25171159 gaactctgcaattcttcaatcttcatagttttcacatcctttgctt 25171114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 692
Target Start/End: Complemental strand, 50912884 - 50912836
Alignment:
Q  644 agaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 692  Q
    ||||||||||| ||||||||| |||| ||| | ||||||||||||||||    
T  50912884 agaactctgcagttcttcaatcttcatagtcttcacatcctttgcttct 50912836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 423
Target Start/End: Complemental strand, 23255018 - 23254770
Alignment:
Q  175 ttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtat 274  Q
    |||||| || |||||||||||||||||| | ||||||| |||||||| ||||| |||| ||| |||||| | |||||| | ||||| || || | ||| |    
T  23255018 ttatttccaatcatatgattagaacaactagtatctaacaaccatctttctgaattgcaactctcattactagttgttgtaaccatgaataacattgtgt 23254919  T
Q  275 cataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaactt 374  Q
    || ||||| ||||||||||   ||   | ||||||| |||| |||||||| ||||||| | ||||| || ||  ||||||||| || | |||||||||||    
T  23254918 cagaatctgaatcttcttgaacaatcttagcttgttgctctacattctttgcttgctttcctttactagacccgcattcagaaacaaagtgaccaaactt 23254819  T
Q  375 ttcacaattataacaacatatcttcttcttatcaaagcctttcttcttg 423  Q
     ||||| ||| | ||    ||||||||||||||||| ||||||||||||    
T  23254818 ctcacatttaaagcactgaatcttcttcttatcaaaacctttcttcttg 23254770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 8319005 - 8319111
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  8319005 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8319104  T
Q  610 ttctttc 616  Q
    |||||||    
T  8319105 ttctttc 8319111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 17880980 - 17881086
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  17880980 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 17881079  T
Q  610 ttctttc 616  Q
    |||||||    
T  17881080 ttctttc 17881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 27571233 - 27571339
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27571233 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27571332  T
Q  610 ttctttc 616  Q
    |||||||    
T  27571333 ttctttc 27571339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 616
Target Start/End: Complemental strand, 17160745 - 17160643
Alignment:
Q  514 tagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttct 613  Q
    |||||||| | || |||||||||||  | ||  ||||||| ||||||||||| | |||||||||||  || ||||||||||||||||||||||| |||||    
T  17160745 tagagttattcttccctttcttgaatattttcctatcataatcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttct 17160646  T
Q  614 ttc 616  Q
    |||    
T  17160645 ttc 17160643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 687
Target Start/End: Original strand, 21414100 - 21414277
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||  |||||||||||   ||||||||||||||  ||||||||| ||||| |||||||      
T  21414100 cccttagagtttttcttccctttcttgaagttcttcctatcattatcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcactgt 21414199  T
Q  610 ttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 687  Q
    |||||||||  |  || |||||| |||| || || ||||||| || ||| ||||| ||||| || | |||||||||||    
T  21414200 ttctttcagttaccatcaattcatgtgcttctaatgaactcttcaattcctcaatcttcaatgtcttcacatcctttg 21414277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 23254684 - 23254611
Alignment:
Q  534 ttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcact 607  Q
    ||||| |||||| ||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||||||    
T  23254684 ttgaagttctttctatcaaaatcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcact 23254611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 27570804 - 27571149
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | ||||||    ||||| || |||||| ||||||||  ||||||||| ||  |  | ||||     
T  27570804 ccattctttccttcaatagcaatattccccattccttctgcaactaagactctattatctgcaagtttcacctttgtgtttcttccagaatccacttctc 27570903  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  ||||  || ||||||||||||||||||||||| ||||||| ||||| || | ||| ||||  || |||||| | |||||| | ||||| |     
T  27570904 ttaaccatgtcttggttccagtcatatgattagaacaaccagtatctaagaaccaactttttgaattgcagctctcattactagttgttgtaaccatcat 27571003  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||| | || | ||||||  || || |||||||||  |||||| | |||||||| |||||||||||| ||||||    
T  27571004 gaataatgactcagaatctgaatcatcttgagcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagatgcataa 27571103  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  27571104 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 27571149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 8318576 - 8318921
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  8318576 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 8318675  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  8318676 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 8318775  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| |||||     
T  8318776 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatag 8318875  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  8318876 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 8318921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 23255132 - 23255072
Alignment:
Q  61 tttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgat 121  Q
    ||||||||||||| ||||||| |||| || ||||| |||| | ||||||||||||||||||    
T  23255132 tttccattctttccttcaatagcaatattccccattccttctgcaactagtgttctatgat 23255072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 530 - 687
Target Start/End: Original strand, 13270049 - 13270206
Alignment:
Q  530 tttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaat 629  Q
    ||||||||| || ||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||||||||  |  || |||    
T  13270049 tttcttgaagttattcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaat 13270148  T
Q  630 tcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 687  Q
    ||| |||| || || |||||||||| ||||||||| ||||| || | |||||| ||||    
T  13270149 tcatgtgcttctaatgaactctgcaattcttcaatcttcaatgtcttcacatcttttg 13270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 522 - 606
Target Start/End: Complemental strand, 42515469 - 42515385
Alignment:
Q  522 cttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcac 606  Q
    ||||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  42515469 ctttttcctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcac 42515385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 8052048 - 8051942
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  8052048 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8051949  T
Q  610 ttctttc 616  Q
    |||||||    
T  8051948 ttctttc 8051942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 36671707 - 36671601
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  36671707 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 36671608  T
Q  610 ttctttc 616  Q
    |||||||    
T  36671607 ttctttc 36671601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 685
Target Start/End: Complemental strand, 17256418 - 17256261
Alignment:
Q  528 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 627  Q
    ||||||||||| |||||  ||||||| ||||||||  | | |||||||||||| ||| ||||||||||||||||||||   ||||| ||||| |  || |    
T  17256418 cctttcttgaagttcttcctatcataatcatcctttctgatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatca 17256319  T
Q  628 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctt 685  Q
    ||||| | || ||||  ||||| |||| |||| |||| ||||| |||| |||||||||    
T  17256318 attcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatcctt 17256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 8052477 - 8052132
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  8052477 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 8052378  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  8052377 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 8052278  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  8052277 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 8052178  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  8052177 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 8052132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 36672136 - 36671791
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  36672136 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 36672037  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  36672036 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 36671937  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  36671936 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 36671837  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  36671836 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 36671791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 13269872 - 13269916
Alignment:
Q  336 tttaccagtccaacattcagaagcataatgaccaaacttttcaca 380  Q
    |||||||| ||||||||| ||||||||||| ||||| ||||||||    
T  13269872 tttaccagaccaacattctgaagcataatgtccaaatttttcaca 13269916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 48366 - 48472
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  48366 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 48465  T
Q  610 ttctttc 616  Q
    |||||||    
T  48466 ttctttc 48472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 47937 - 48282
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  47937 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 48036  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  48037 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 48136  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| |||||     
T  48137 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatag 48236  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  48237 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 48282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 27758053 - 27757947
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27758053 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27757954  T
Q  610 ttctttc 616  Q
    |||||||    
T  27757953 ttctttc 27757947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 7943584 - 7943690
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7943584 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7943683  T
Q  610 ttctttc 616  Q
    |||||||    
T  7943684 ttctttc 7943690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 7943155 - 7943500
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  7943155 ccattctttccttcaatagcaatattccccattccttatgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 7943254  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  7943255 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 7943354  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  7943355 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 7943454  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  7943455 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 7943500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 27758482 - 27758137
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | ||| ||    |||||||| |||||| ||||||||  | ||||||| ||  |  | ||||     
T  27758482 ccattctttccttcaatagcaatattccccattccttctgcaattaagactctatgatctgcaagtttcacctttgtatttcttccaggatccacttctc 27758383  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||||||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  27758382 ttaaccatgtcttatttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 27758283  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | | |||||| |||||||||||| |||||     
T  27758282 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctataccagaccaacattcagaggcatag 27758183  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  27758182 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 27758137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 26312669 - 26312563
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  26312669 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 26312570  T
Q  610 ttctttc 616  Q
    |||||||    
T  26312569 ttctttc 26312563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 39795051 - 39794945
Alignment:
Q  510 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 609  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  39795051 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 39794952  T
Q  610 ttctttc 616  Q
    |||||||    
T  39794951 ttctttc 39794945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 26313098 - 26312753
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  26313098 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 26312999  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  26312998 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 26312899  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| |||||     
T  26312898 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatag 26312799  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  26312798 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 26312753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 39795480 - 39795135
Alignment:
Q  64 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 163  Q
    |||||||||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | ||||     
T  39795480 ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc 39795381  T
Q  164 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 263  Q
    | |||||  |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |     
T  39795380 ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat 39795281  T
Q  264 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 363  Q
     || | ||  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| |||||     
T  39795280 gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag 39795181  T
Q  364 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 409  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  39795180 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 39795135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 626 - 691
Target Start/End: Original strand, 25589982 - 25590047
Alignment:
Q  626 taattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttc 691  Q
    ||||||| |||| ||||| ||||| |||| ||||||||| |||| |||||  ||||||||||||||    
T  25589982 taattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttgcttc 25590047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 692
Target Start/End: Complemental strand, 434 - 386
Alignment:
Q  644 agaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 692  Q
    ||||||||||| ||||||||| |||| ||| | ||||||||||||||||    
T  434 agaactctgcagttcttcaatcttcatagtcttcacatcctttgcttct 386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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