View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_high_23 (Length: 332)

Name: NF15954_high_23
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_high_23
NF15954_high_23
[»] chr7 (2 HSPs)
chr7 (35-327)||(43399558-43399852)
chr7 (202-292)||(28165045-28165137)
[»] chr3 (3 HSPs)
chr3 (225-291)||(31337450-31337516)
chr3 (223-280)||(21872318-21872375)
chr3 (224-292)||(24235731-24235799)
[»] chr8 (1 HSPs)
chr8 (204-286)||(29973041-29973125)
[»] chr2 (4 HSPs)
chr2 (221-286)||(11513858-11513923)
chr2 (221-281)||(5043605-5043665)
chr2 (221-292)||(10143126-10143197)
chr2 (221-281)||(33942115-33942175)
[»] chr1 (6 HSPs)
chr1 (223-292)||(33527194-33527263)
chr1 (221-268)||(8130414-8130461)
chr1 (221-279)||(17422983-17423041)
chr1 (223-292)||(25006081-25006150)
chr1 (236-292)||(15360848-15360904)
chr1 (224-292)||(27738228-27738296)
[»] chr4 (4 HSPs)
chr4 (223-286)||(2996533-2996596)
chr4 (217-267)||(42866047-42866097)
chr4 (205-286)||(43371998-43372079)
chr4 (225-286)||(55870390-55870451)
[»] scaffold0024 (1 HSPs)
scaffold0024 (223-292)||(27530-27599)
[»] chr6 (1 HSPs)
chr6 (223-292)||(4006668-4006737)
[»] chr5 (3 HSPs)
chr5 (223-292)||(14295460-14295529)
chr5 (221-262)||(34245708-34245749)
chr5 (224-268)||(18704084-18704128)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 35 - 327
Target Start/End: Original strand, 43399558 - 43399852
Alignment:
Q  35 tgttattttgaattgtatttctgaatattttgtgattaatttggtttaacattctgaacatactttgggtttctttgtattcatttatttcattttatat 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  43399558 tgttattttgaattgtatttctgaatattttgtgattaatttggtttaacattctcaacatactttgggtttctttggattcatttatttcattttatat 43399657  T
Q  135 accgacacaagcattgtgaaactat--ttaccagagcttttggaaatagtatattataagctgatccagacttatttccataaactcaatgatagcttat 232  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43399658 accgacacaagcattgtgaaactatatttaccagagcttttggaaatagtatattataagctgatccagacttatttccataaactcaatgatagcttat 43399757  T
Q  233 gaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaatgataaacgcttaattttattttcaataacctttg 327  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43399758 taagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaatgataaacgcttaattttattttcaataacctttg 43399852  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 28165137 - 28165045
Alignment:
Q  202 acttatttccataaactca--atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    |||||||||||||| |||   |||||||||||| ||||||  ||||||||||| ||||||||  |||||   |||||||||| |||| |||||    
T  28165137 acttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaacaatttgacttcattttatcttttgttatagaa 28165045  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 31337450 - 31337516
Alignment:
Q  225 tagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttaga 291  Q
    ||||||||||| |||||||||| ||||| | ||||||| |||||  ||||||||||| |||||||||    
T  31337450 tagcttatgaatacaacttataacttatataaaaacagtttgactttattttatcttttgttttaga 31337516  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 21872318 - 21872375
Alignment:
Q  223 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatct 280  Q
    ||||||||||||| |||||||||||||||| | |||| |  |||||| ||||||||||    
T  21872318 gatagcttatgaaaacaacttatagcttatatcaaaaaaatttgaccttattttatct 21872375  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 24235731 - 24235799
Alignment:
Q  224 atagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    |||||||||||| |||||||||||||||| || ||| || |||||  ||| ||||||| |||| |||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaa 24235799  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 29973125 - 29973041
Alignment:
Q  204 ttatttccataaactc--aatgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 286  Q
    ||||||||||||||||  || ||||||||||||| |||||||||||||||| | |||| || |||||  ||||||| ||| ||||    
T  29973125 ttatttccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgtt 29973041  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 11513923 - 11513858
Alignment:
Q  221 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 286  Q
    ||||||||||||||| |||||||||||||||| | ||||||  |||||  ||||||||||| ||||    
T  11513923 atgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 5043605 - 5043665
Alignment:
Q  221 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatctt 281  Q
    ||||||||||||||| ||||||| |||||||| | ||||||| |||||  |||||||||||    
T  5043605 atgatagcttatgaaaacaacttctagcttatatgaaaacagtttgactttattttatctt 5043665  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 10143197 - 10143126
Alignment:
Q  221 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    ||||||||||||||| | |||||||||||||| | ||||||| |||||   |||||||||| |||| |||||    
T  10143197 atgatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaa 10143126  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 33942175 - 33942115
Alignment:
Q  221 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatctt 281  Q
    ||||| ||||||||| |||||||||||||||  | ||||||| |||||  |||||||||||    
T  33942175 atgatggcttatgaaaacaacttatagcttacatgaaaacagtttgactttattttatctt 33942115  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 33527194 - 33527263
Alignment:
Q  223 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    |||| |||||||| ||| ||||||| |||| | ||||||| ||||| |||||||||||| ||||||||||    
T  33527194 gataacttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaa 33527263  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 8130461 - 8130414
Alignment:
Q  221 atgatagcttatgaagacaacttatagcttattttaaaacagcttgac 268  Q
    ||||||||||||||| |||||||||||||||| | ||||||| |||||    
T  8130461 atgatagcttatgaaaacaacttatagcttatgtgaaaacagtttgac 8130414  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 17422983 - 17423041
Alignment:
Q  221 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatc 279  Q
    |||||||| |||||| |||||||||||||||| | ||| |||||||||  |||||||||    
T  17422983 atgatagcatatgaaaacaacttatagcttatatgaaatcagcttgactttattttatc 17423041  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 25006081 - 25006150
Alignment:
Q  223 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    ||||||||||||| |||||||||||||||| | ||||||  |||||  ||||||| | |||||| |||||    
T  25006081 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttaccgtctgttatagaa 25006150  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 15360904 - 15360848
Alignment:
Q  236 gacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    ||||||||||||||||| | ||||||| |||||  ||||||||||| |||| |||||    
T  15360904 gacaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaa 15360848  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 27738228 - 27738296
Alignment:
Q  224 atagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    |||||||||||| |||| ||||||||||| | ||||||  |||||  ||||||||||| |||| |||||    
T  27738228 atagcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgttgtagaa 27738296  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 2996596 - 2996533
Alignment:
Q  223 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 286  Q
    ||||||||||||| |||||||||| ||||| | ||||||  ||||| |||||||||||| ||||    
T  2996596 gatagcttatgaaaacaacttataacttatataaaaacaatttgactgtattttatcttatgtt 2996533  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 42866097 - 42866047
Alignment:
Q  217 ctcaatgatagcttatgaagacaacttatagcttattttaaaacagcttga 267  Q
    ||||| ||||||||||||| |||||||||||||||| | ||||||| ||||    
T  42866097 ctcaaggatagcttatgaaaacaacttatagcttatataaaaacagtttga 42866047  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 43371998 - 43372079
Alignment:
Q  205 tatttccataaactcaatgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 286  Q
    ||||||||||| |||   |||||||||||||  ||  ||||||||||| | ||||||| ||||| |||||||||||| ||||    
T  43371998 tatttccataagctcttggatagcttatgaaatcagtttatagcttatataaaaacagtttgactgtattttatcttttgtt 43372079  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 55870390 - 55870451
Alignment:
Q  225 tagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 286  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||  ||||| ||||| ||||    
T  55870390 tagcttatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgtt 55870451  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 27599 - 27530
Alignment:
Q  223 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    ||||| ||||||| ||||||||||| |||| | ||||||  |||||  |||||||||||||||| |||||    
T  27599 gatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaa 27530  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 4006737 - 4006668
Alignment:
Q  223 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    ||||||||||||| |||||||||||||||| | ||||||  |||||  ||||||||| | |||| |||||    
T  4006737 gatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaa 4006668  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 14295529 - 14295460
Alignment:
Q  223 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 292  Q
    ||||||||| ||| ||| |||||||||||| | ||||||| |||||  ||||||||||| |||| |||||    
T  14295529 gatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaa 14295460  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 34245749 - 34245708
Alignment:
Q  221 atgatagcttatgaagacaacttatagcttattttaaaacag 262  Q
    |||||||||||| || |||||||||||||||| |||||||||    
T  34245749 atgatagcttataaaaacaacttatagcttatattaaaacag 34245708  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 18704084 - 18704128
Alignment:
Q  224 atagcttatgaagacaacttatagcttattttaaaacagcttgac 268  Q
    |||||||||||| |||||||||||||||| | |||| ||||||||    
T  18704084 atagcttatgaaaacaacttatagcttatataaaaatagcttgac 18704128  T

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