View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_high_43 (Length: 206)
Name: NF15954_high_43
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 39940381 - 39940558
Alignment:
| Q |
13 |
gcaaaggcaatagaataattcaaaatggtgtataatgttaaccactatataatgtatgcttgcttgtattaaaaatttaaacacannnnnnnnnnccttc |
112 |
Q |
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| T |
39940381 |
gcaaaggcgatagaataattcaaaatggtgtataatgttaaccactatataatgtatgcttgcttgtattaaaaattaaaacacattttttgtttccttc |
39940480 |
T |
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| Q |
113 |
ttattatttgattttgacataaataatgaaaaattgtactataaagtaatttgatttctttgatcttaacattaatat |
190 |
Q |
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| T |
39940481 |
ttattatttgattttgacataaataatgaaaaattgtactataaagcaatttgatttctttgatcttaacattaatat |
39940558 |
T |
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