View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_high_6 (Length: 539)
Name: NF15954_high_6
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 9049504 - 9050025
Alignment:
| Q |
1 |
ttgtagaagagagaaaaaagaaggtggatttttaggaaaccagtgaatcatgaaacagtgaataatactcaacaaagtacaccaacaaaattgaagcatg |
100 |
Q |
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| T |
9049504 |
ttgtagaagagagaaaaaagaaggtggatttttaggaaaccagtgaatcatgaaacagtgaataatactcaacaaagtacaccaacaaaattgaagcatg |
9049603 |
T |
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| Q |
101 |
atgtggttactgctacaagtgtggcttcaaggacagatcaggatgagaaacatgctcttgctgtggctatagctacagctgaggcagcaagagctactgc |
200 |
Q |
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| T |
9049604 |
atgtggttactgctacaagtgtggcttcaaggacagatcaggatgagaaacatgctcttgctgtggctatggctacagctgaggcagcaagagctactgc |
9049703 |
T |
|
| Q |
201 |
tcaagctgctgtggaagttgcaaggttgactaagagttcaaatcatgctagggagcattatgctgctgttgtgattcaaacttcttttagaggttatttg |
300 |
Q |
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| T |
9049704 |
tcaagctgctgtggaagttgcaaggttgactaagagttcaaatcatgctagggagcattatgcagctgttgtgattcaaacttcttttagaggttatttg |
9049803 |
T |
|
| Q |
301 |
gtgagttcccataacagatctaattgcatgtttggaattaatgcgagtttgacgaaatcacggtgtcagtgtaattttgttggaactcttgcatgtttag |
400 |
Q |
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| T |
9049804 |
gtgagttcacataacagatctaattgcatgtttggaattaatgtgagtttgacgaaatcacggtgtgactgtaattttgttgaagctcttgcatgtttag |
9049903 |
T |
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| Q |
401 |
aatcactttatgtttgacaatatcatggtgttactttcttgcaaaatcacgacgagtcatggtgattctgccaattgccacaatgattttggatcagtgg |
500 |
Q |
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| T |
9049904 |
aatcactttatgtttgacaatatcatggtgtcactttcttgcaaaatcaggacgagtcactgtgattctgccaattgccacaatga-tttggatcagtgg |
9050002 |
T |
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| Q |
501 |
cgagtttggcagaatcacaatgt |
523 |
Q |
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| T |
9050003 |
cgagtttggcagaatcacaatgt |
9050025 |
T |
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