View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_11 (Length: 507)
Name: NF15954_low_11
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_11 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 3742 - 4225
Alignment:
| Q |
1 |
gtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtatacttctttacagaaatagttatttgttagttatagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3742 |
gtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtatacttctttacagaaatagttatttgtta----tagt |
3837 |
T |
|
| Q |
101 |
ttttacttatttcgtggtaggatatgcaaatgtttaatgaagtataaaactactattgttgcagttcaataatggtttcatttatttatatcttcacttc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3838 |
ttttacttatttcgtggtaggatatgcaagtgtttaatgaagtataaaactactattgttgcagttcaataatggtttcatttatttatatcttcacttc |
3937 |
T |
|
| Q |
201 |
agggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgccagtgagaaggaaaaccccttgttgtgggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3938 |
agggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgctagtgagaaggaaaaccccttgttgtgggc |
4037 |
T |
|
| Q |
301 |
ttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggctggtgtgtcacaatcactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4038 |
ttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaagaaagcaaaaaagatggctggtgtgtcacaatcactt |
4137 |
T |
|
| Q |
401 |
cccaaggatgaagcaactgatggtcagaattctagcaaacctgatacacggacatcagagaccagctcttgtgctactgagcatccaa |
488 |
Q |
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| T |
4138 |
cccaaggatgaatcaactgatggtcagaattctagcaaacctgatacacggacatcagagactggctcttgtgctactgagcatccaa |
4225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 21447794 - 21447311
Alignment:
| Q |
1 |
gtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtatacttctttacagaaatagttatttgttagttatagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21447794 |
gtgacagtgctgttatgtggcactagcggatgtggaaaatcgacgttgtctgcaatactggtatacttctttacagaaatagttatttgtta----tagt |
21447699 |
T |
|
| Q |
101 |
ttttacttatttcgtggtaggatatgcaaatgtttaatgaagtataaaactactattgttgcagttcaataatggtttcatttatttatatcttcacttc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447698 |
ttttacttatttcgtggtaggatatgcaagtgtttaatgaagtataaaactactattgttgcagttcaataatggtttcatttatttatatcttcacttc |
21447599 |
T |
|
| Q |
201 |
agggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgccagtgagaaggaaaaccccttgttgtgggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21447598 |
agggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgctagtgagaaggaaaaccccttgttgtgggc |
21447499 |
T |
|
| Q |
301 |
ttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggctggtgtgtcacaatcactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21447498 |
ttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaagaaagcaaaaaagatggctggtgtgtcacaatcactt |
21447399 |
T |
|
| Q |
401 |
cccaaggatgaagcaactgatggtcagaattctagcaaacctgatacacggacatcagagaccagctcttgtgctactgagcatccaa |
488 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21447398 |
cccaaggatgaatcaactgatggtcagaattctagcaaacctgatacacggacatcagagactggctcttgtgctactgagcatccaa |
21447311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 183 - 439
Target Start/End: Original strand, 40685001 - 40685257
Alignment:
| Q |
183 |
tatttatatcttcacttcagggtagcagattgggaatcacgacagttgtatcaacggattccattaggcacatgatgagaagttttgccagtgagaagga |
282 |
Q |
| |
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|||||||||||| ||||||||| || | |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| | ||| ||||| |
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| T |
40685001 |
tatttatatctttacttcagggaagtcggctgggaatcacaacagttgtatcaactgattccattaggcacatgatgagaggttttgctaatgaaaagga |
40685100 |
T |
|
| Q |
283 |
aaaccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggct |
382 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||| ||| |||||||||||| |
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| T |
40685101 |
aaaccccttgttatgggcctctacctaccatgcaggcgagtgcttggatcctgttgctgttgcagaagcaaaggcaaaaaggagagcgaaaaagatggct |
40685200 |
T |
|
| Q |
383 |
ggtgtgtcacaatcacttcccaaggatgaagcaactgatggtcagaattctagcaaa |
439 |
Q |
| |
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||||| ||||| ||||| || |||||||||| |||||| ||||| | ||||||||| |
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|
| T |
40685201 |
ggtgtatcacagtcactacctaaggatgaagtaactgaaggtcacacctctagcaaa |
40685257 |
T |
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