View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_low_14 (Length: 477)

Name: NF15954_low_14
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_low_14
NF15954_low_14
[»] chr7 (1 HSPs)
chr7 (432-471)||(18415176-18415215)
[»] chr3 (4 HSPs)
chr3 (432-473)||(16982663-16982704)
chr3 (438-471)||(9642509-9642542)
chr3 (435-471)||(14171214-14171250)
chr3 (435-471)||(48763560-48763596)
[»] chr5 (1 HSPs)
chr5 (432-471)||(21000243-21000282)
[»] chr2 (1 HSPs)
chr2 (432-471)||(32286931-32286970)
[»] chr1 (2 HSPs)
chr1 (432-470)||(47913637-47913675)
chr1 (433-470)||(17723393-17723430)
[»] chr4 (2 HSPs)
chr4 (435-471)||(9369199-9369235)
chr4 (438-470)||(16040779-16040811)


Alignment Details
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 18415215 - 18415176
Alignment:
Q  432 cttataagacccgtgcggcgcacgggtcaactatctagtt 471  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  18415215 cttataagacccgtgcggcgcacgggtcacctatctagtt 18415176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 16982663 - 16982704
Alignment:
Q  432 cttataagacccgtgcggcgcacgggtcaactatctagttca 473  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  16982663 cttataagacccgtgcggcgcacgggtcatcaatctagttca 16982704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 471
Target Start/End: Original strand, 9642509 - 9642542
Alignment:
Q  438 agacccgtgcggcgcacgggtcaactatctagtt 471  Q
    ||||||||||||||||||||||| ||||||||||    
T  9642509 agacccgtgcggcgcacgggtcatctatctagtt 9642542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 14171250 - 14171214
Alignment:
Q  435 ataagacccgtgcggcgcacgggtcaactatctagtt 471  Q
    |||||||||||||||||||||||||| | ||||||||    
T  14171250 ataagacccgtgcggcgcacgggtcatcaatctagtt 14171214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 48763560 - 48763596
Alignment:
Q  435 ataagacccgtgcggcgcacgggtcaactatctagtt 471  Q
    |||||||||||||||||||||||||| | ||||||||    
T  48763560 ataagacccgtgcggcgcacgggtcatcaatctagtt 48763596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 21000282 - 21000243
Alignment:
Q  432 cttataagacccgtgcggcgcacgggtcaactatctagtt 471  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  21000282 cttataagacccgtgcggcgcactggtcacctatctagtt 21000243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 32286931 - 32286970
Alignment:
Q  432 cttataagacccgtgcggcgcacgggtcaactatctagtt 471  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  32286931 cttataagacccgtgcggcgcacgggtcggctatctagtt 32286970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 47913675 - 47913637
Alignment:
Q  432 cttataagacccgtgcggcgcacgggtcaactatctagt 470  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  47913675 cttataagacccgtgcggcgcacgggtcatcaatctagt 47913637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 17723430 - 17723393
Alignment:
Q  433 ttataagacccgtgcggcgcacgggtcaactatctagt 470  Q
    ||||||||||||||||||||||||||| || |||||||    
T  17723430 ttataagacccgtgcggcgcacgggtccacaatctagt 17723393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 9369199 - 9369235
Alignment:
Q  435 ataagacccgtgcggcgcacgggtcaactatctagtt 471  Q
    |||||||||||||||||||||||||| | ||||||||    
T  9369199 ataagacccgtgcggcgcacgggtcatcaatctagtt 9369235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 470
Target Start/End: Original strand, 16040779 - 16040811
Alignment:
Q  438 agacccgtgcggcgcacgggtcaactatctagt 470  Q
    ||||||||||||||||||||||| |||||||||    
T  16040779 agacccgtgcggcgcacgggtcatctatctagt 16040811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University