View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_16 (Length: 471)
Name: NF15954_low_16
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Original strand, 1218850 - 1219287
Alignment:
| Q |
16 |
atgaaggacagaggttattgctcagagaggaaaattaattggaacagaaagcttcagaaacagttaatatttgatgatcttcgcgttcgttcaatgcaaa |
115 |
Q |
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| T |
1218850 |
atgaaggacagaggttattgctcagagaggaaaattaattggaacagaaagcttcagaaacagttaatatttgatgatcttcgcgttcgttcaatgcaaa |
1218949 |
T |
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| Q |
116 |
acaggattcgagcaaaggtctctggtcataatagttcagaacaatcttcagaaatccaaattccattagcttctggtataaatttggagactttaaacta |
215 |
Q |
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| T |
1218950 |
acaggattcgagccaaggtctctggccataatagttcagaacaatcttcagaaatccaaattccattagcttctggtataaatttggagactttaaacta |
1219049 |
T |
|
| Q |
216 |
catagtgacaataggattgggtaatcagaacatgactgtgataatcgataccggaagtgacttaacatgggtccaatgtgatccatgtatgtcatgttat |
315 |
Q |
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| T |
1219050 |
cattgtgacaataggattgggtaatcagaacatgactgtgataatcgataccggaagtgacttaacatgggtccaatgtgatccatgtatgtcatgttat |
1219149 |
T |
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| Q |
316 |
agtcaacaaggacctgttttcaacccttctaactcctcttcctataactcattactatgcaattcatcaacatgtcaaaatcttcaatttactacaggaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1219150 |
agtcaacaaggacctgttttcaacccttctaactcctcttcctataactcattactatgcaattcatcaacatgtcaaaatcttcaatttactaccggaa |
1219249 |
T |
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| Q |
416 |
atacagaagcatgtgaaagtaataatccatctagttgt |
453 |
Q |
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| T |
1219250 |
atacagaagcatgtgaaagtaataatccatctagttgt |
1219287 |
T |
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