View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_17 (Length: 429)
Name: NF15954_low_17
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 25217628 - 25217231
Alignment:
| Q |
19 |
aatctgctttatagaaaatcagttaatttagtttagttagttgctactcccgtagatttgtctttaaacattctgaagcttaatgcatttagaaatgctt |
118 |
Q |
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| T |
25217628 |
aatctgctttatagaaattcagttaatttagtttagttagttgctactcccgtagatttgtctttaaacattctgaagcttaatgcatttagaaatgctt |
25217529 |
T |
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| Q |
119 |
ttgaatattgtcttgatgccattttccaatctcctcctgtcttcatcattgccttaaattcctcaaaacttactcgaccatcctataacaaaacaaaaca |
218 |
Q |
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| T |
25217528 |
ttgaatattgtcttgatgccattttccaatctcctcctgtcttcatcattgccttaaattcctcaaaacttactcgaccatcctataacaaaacaaaaca |
25217429 |
T |
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| Q |
219 |
ttataaccgatttctaactaatataaccgatttataaccgacttctaacatctatcttaccttatccaagtcgacatcgttgagaatgtctctgatcact |
318 |
Q |
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| T |
25217428 |
ttataaccgatttctaactaatataa-cgatttataaccgacttctaacatatatcttaccttatccaagtcgacatcgttgagaatgtctctgatcact |
25217330 |
T |
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| Q |
319 |
tggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactcaacatatccactcttattcttgtcaaagaaattgaatgcttctgtg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25217329 |
tggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactcaacatatccactcttattcttgtcaaagaaattgaatgcttctgtg |
25217231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 1969514 - 1969696
Alignment:
| Q |
32 |
gaaaatcagttaatttagtttagttagttgctactcccgtagatttgtctttaaacattctgaagcttaatgcatttagaaatgcttttgaatattgtct |
131 |
Q |
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| T |
1969514 |
gaaattcagttaatttagtttagttagttgctactcccgtagatttgtctttaaacattatgaagcttaatgcatttagaaatgcttttgaatattgtct |
1969613 |
T |
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| Q |
132 |
tgatgccattttccaatctcctcctgtcttcatcattgccttaaattcctcaaaacttactcgaccatcctataacaaaacaa |
214 |
Q |
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| T |
1969614 |
agatgccattttccaatctccttctgtcttcatcattgccttaaattcctcaaaacttactcgaccattctttaacaaaacaa |
1969696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 273 - 417
Target Start/End: Original strand, 1969782 - 1969926
Alignment:
| Q |
273 |
tcttaccttatccaagtcgacatcgttgagaatgtctctgatcacttggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactca |
372 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||| |
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| T |
1969782 |
tcttaccttatccaagtctacatagttgagaatgtctcttatcacttggtcatcggtcgaaccatcatctgatagggaatctttcaattcatcaaactca |
1969881 |
T |
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| Q |
373 |
acatatccactcttattcttgtcaaagaaattgaatgcttctgtg |
417 |
Q |
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| T |
1969882 |
acatatccactcttattcttgtcaaagaaattgaatgcttctgtg |
1969926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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