View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_19 (Length: 400)
Name: NF15954_low_19
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 61 - 381
Target Start/End: Complemental strand, 10688446 - 10688134
Alignment:
| Q |
61 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttagatagtgaacccagaatgtgaatctga |
160 |
Q |
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| T |
10688446 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttaggtagtgaacccagaatgtgaatctga |
10688347 |
T |
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| Q |
161 |
ctgatcaaaaagtagtatttataggcatagaaaattattactattactttgagaaaacatttttcagaaaagttggggaatgaggaaagtgtatggaaaa |
260 |
Q |
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| T |
10688346 |
ttgatcaaaaagtagtatttataggcatagaaaattattactattactatgagaaaacatttttcagaaaagttggggaat--------tgtatggaaaa |
10688255 |
T |
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| Q |
261 |
tatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatcc |
360 |
Q |
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| T |
10688254 |
tatacaaggagaataattgtgcaagtgttgtgggattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatgc |
10688155 |
T |
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| Q |
361 |
ttgatcaactcactgtttcta |
381 |
Q |
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| T |
10688154 |
ttgatcaactcattatttcta |
10688134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 216 - 382
Target Start/End: Complemental strand, 5445011 - 5444844
Alignment:
| Q |
216 |
aacatttttcagaaaagttggggaatgaggaaagtgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaact |
315 |
Q |
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| T |
5445011 |
aacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggattggcaatttccaaagaact |
5444912 |
T |
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| Q |
316 |
tgaactgaggtt-cttgatttggcaatttccaatattcatagatccttgatcaactcactgtttctac |
382 |
Q |
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| T |
5444911 |
tggactgaggttgagggatttggcaatttcccatattcattgatccttgatcaactcattatttctac |
5444844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 5445069 - 5445016
Alignment:
| Q |
136 |
tagtgaacccagaatgtgaatctgactgatcaaaaagtagtatttataggcata |
189 |
Q |
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| T |
5445069 |
tagtgaaccgagaatatggatctgattgatcaaaaggtagtttttataggcata |
5445016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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