View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15954_low_2 (Length: 697)
Name: NF15954_low_2
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_2 |
 | |
|
| [»] scaffold0044 (2 HSPs) |
| | |
|
| [»] scaffold0336 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 628; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 20 - 687
Target Start/End: Complemental strand, 30048961 - 30048294
Alignment:
| Q |
20 |
acatccccataatataaatcacatcttaaattactattaattttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30048961 |
acatccccataatataaatcacatcttaaattactattaattttccattctttctttcaataacaatctttcccatgccttttccaactagtgttctatg |
30048862 |
T |
|
| Q |
120 |
atatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048861 |
atatgcaagcttcaccttgctgtttcttcccgtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccat |
30048762 |
T |
|
| Q |
220 |
ctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcat |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30048761 |
ctatctgacttacgactttcattattggttgttttcaccattaacaagactgcatcataatctaaatcttcttgtgaaagtttggcttgttcctcttcat |
30048662 |
T |
|
| Q |
320 |
tctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttctt |
419 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048661 |
tctttacttgcttccgtttaccggtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttctt |
30048562 |
T |
|
| Q |
420 |
cttgccttgataattaccataacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagt |
519 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048561 |
cttgccttgataattaccagaacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagt |
30048462 |
T |
|
| Q |
520 |
tacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048461 |
tacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga |
30048362 |
T |
|
| Q |
620 |
cattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg |
687 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30048361 |
cattattaattcacgtgcctccaatgaactctgcatttcttcaattttcaaagttttcacatcctttg |
30048294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 277 - 486
Target Start/End: Original strand, 16596445 - 16596654
Alignment:
| Q |
277 |
taatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaactttt |
376 |
Q |
| |
|
|||||| ||||||||||| |||| | ||||||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
16596445 |
taatctgaatcttcttgttcaagtttaacttgttcctcttctttctttgattgcttccttttaccagtccaacactcagaagcataatgaccaaatattt |
16596544 |
T |
|
| Q |
377 |
cacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatcactggc |
476 |
Q |
| |
|
| ||||||||||| || ||||||||||||||| || |||| |||||||| ||||| ||| | |||||||||||||||||||||| ||| || || || |
|
|
| T |
16596545 |
ctcaattataacattgtaccttcttcttatcaaaacccctctttttgccttggtaatttccaaagcctcctccttttgaagattcagctttgtcgctagc |
16596644 |
T |
|
| Q |
477 |
tttgttcttc |
486 |
Q |
| |
|
||| |||||| |
|
|
| T |
16596645 |
tttcttcttc |
16596654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 166 - 422
Target Start/End: Original strand, 15065483 - 15065739
Alignment:
| Q |
166 |
aaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaaca |
265 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| || |||| |||||||| ||||| |||| || |||||| | |||||| | ||||| || | |
|
|
| T |
15065483 |
aaccaatccttattttcagtcatatgattagaacaaccagtaactaagaaccatctttctgaattgcagctctcattactagttgttgtaaccatcaata |
15065582 |
T |
|
| Q |
266 |
agactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatg |
365 |
Q |
| |
|
| | ||| ||| ||||| |||| ||||| | || | ||||||||||| ||||||||| ||||||| | |||||||| ||||||||| |||||| | || |
|
|
| T |
15065583 |
acattgtgtcagaatctgaatcctcttgagcaatcttagcttgttcctcatcattctttgcttgctttcctttaccagaccaacattcggaagcaaagtg |
15065682 |
T |
|
| Q |
366 |
accaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttctt |
422 |
Q |
| |
|
| |||| |||||||| ||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
15065683 |
atcaaaattttcacatttaaaacattgaatcttcttcttatcaaaatctttcttctt |
15065739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 524 - 682
Target Start/End: Original strand, 16597894 - 16598047
Alignment:
| Q |
524 |
tttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacatt |
623 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
16597894 |
tttgcctttcttgaaattcttcttatcataaccatctttcttcacagtttgaacttgcaaagcttgttgaatttatctttcactgcttctttc-----cc |
16597988 |
T |
|
| Q |
624 |
attaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatc |
682 |
Q |
| |
|
|| |||||| |||| ||||||||||||| || ||||| ||| |||||||||| |||||| |
|
|
| T |
16597989 |
atcaattcatgtgcttccaaagaactcttcagttcttgaatcttcaaagttttcacatc |
16598047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 528 - 687
Target Start/End: Complemental strand, 10275674 - 10275516
Alignment:
| Q |
528 |
cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta |
627 |
Q |
| |
|
||||||||||| || ||| |||||| ||||||||||| | |||||||||||||| ||||||||||||||||||| ||| |||||||||| | || | |
|
|
| T |
10275674 |
cctttcttgaagttatttctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatcttt-actgcttctttcagttaccatca |
10275576 |
T |
|
| Q |
628 |
attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg |
687 |
Q |
| |
|
||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| |
|
|
| T |
10275575 |
attcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg |
10275516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 12019945 - 12019839
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | | |
|
|
| T |
12019945 |
cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc |
12019846 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
12019845 |
ttctttc |
12019839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 37659883 - 37659777
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | | |
|
|
| T |
37659883 |
cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc |
37659784 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
37659783 |
ttctttc |
37659777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 7102875 - 7102981
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
7102875 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
7102974 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
7102975 |
ttctttc |
7102981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 16795325 - 16795219
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
16795325 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
16795226 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
16795225 |
ttctttc |
16795219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 30696452 - 30696346
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| | |||||| |||||||||||||| | | |
|
|
| T |
30696452 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgc |
30696353 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
30696352 |
ttctttc |
30696346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 40370748 - 40370854
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| | ||||||||||||||| ||||| | | |
|
|
| T |
40370748 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatttttcattgc |
40370847 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
40370848 |
ttctttc |
40370854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 40370319 - 40370664
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||||| |||||||| |||||| |||||||| |||||||||||| | | |||| |
|
|
| T |
40370319 |
ccattctttccttcaatagcaatgttccccattccttctgcaactaagactctatgatctgcaagtttcacctttgtgtttcttctagaatccacttctc |
40370418 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||| | ||| | || ||||||||||||||||||||||| ||||||| ||||| || ||||| ||| || |||||| | |||||| | ||||| | |
|
|
| T |
40370419 |
ttaacaatgtctgagttccagtcatatgattagaacaaccagtatctaagaaccaactttctgaattggagctctcattactagttgttgtaaccatcat |
40370518 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||| | || | |||||| ||| || ||||||||| |||||| | ||||| || |||||||||| | |||||| |
|
|
| T |
40370519 |
gaataatgactcagaatctgaatcatcttgagcaattttggcttcttcttcatcattctttgattgctttcctttactagaccaacattcaaaggcataa |
40370618 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
40370619 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
40370664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 619
Target Start/End: Original strand, 15065838 - 15065926
Alignment:
| Q |
531 |
ttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga |
619 |
Q |
| |
|
|||||||| |||||||||||| | ||||| ||||||| || |||||||| || |||||||||||| || ||||||| ||||| ||||| |
|
|
| T |
15065838 |
ttcttgaagttctttttatcagaatcatctttcttcatggtctgaacttgcaaggcttgttgaattcatatttcactgcttctctcaga |
15065926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 7102446 - 7102791
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
7102446 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
7102545 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
7102546 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
7102645 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
7102646 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
7102745 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
7102746 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
7102791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 409
Target Start/End: Complemental strand, 12020254 - 12020029
Alignment:
| Q |
184 |
gtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatcta |
283 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | || | || ||| ||||| |
|
|
| T |
12020254 |
gtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgattcagaatctg |
12020155 |
T |
|
| Q |
284 |
aatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaatt |
383 |
Q |
| |
|
|||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| |||||||||||| ||||| || ||||| || ||||| || |
|
|
| T |
12020154 |
aatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaaatttctcacattt |
12020055 |
T |
|
| Q |
384 |
ataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
12020054 |
gaaacactgaatcttcttcttatcaa |
12020029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 16795754 - 16795409
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
16795754 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
16795655 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
16795654 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
16795555 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
16795554 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
16795455 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
16795454 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
16795409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 15065378 - 15065438
Alignment:
| Q |
61 |
tttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgat |
121 |
Q |
| |
|
|||||| |||||| |||||||||||||| | ||| |||| | |||||||||||||||||| |
|
|
| T |
15065378 |
tttccactctttccgtcaataacaatcttcctcattccttctgcaactagtgttctatgat |
15065438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 40 - 670
Target Start/End: Original strand, 22930349 - 22930968
Alignment:
| Q |
40 |
acatcttaaattactattaattttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgc |
139 |
Q |
| |
|
||||||| |||||| | |||| ||| |||||||| ||||||| ||||||||||| |||| | |||||| |||| |||||| |||||||||||||| |
|
|
| T |
22930349 |
acatcttcaattacaactaatcttcaattctttccttcaatagatatctttcccatgccttctgcaactaatgttgtatgatcaacaagcttcaccttgg |
22930448 |
T |
|
| Q |
140 |
tgtttcttctagtgttgatttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttc |
239 |
Q |
| |
|
| || | | || | ||||||||| ||| |||||||||| |||||| || ||| | ||| || ||||||| |||||||| | ||| |||| || || |
|
|
| T |
22930449 |
tattcttccaaggatcgatttcttttaacaaattcttattaaaagtcatgtggttaaatcaaacagtatctaagaaccatctttttgaattgcagctctc |
22930548 |
T |
|
| Q |
240 |
attattggttgttttcaccattaacaagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgttta |
339 |
Q |
| |
|
| || || ||||| ||||||| ||||||||||| ||| ||||||| ||||||| || || | || |||||||||||||||||||||| ||||| |||| |
|
|
| T |
22930549 |
agtactgattgttgtcaccatcaacaagactgtgtcagaatctaagtcttcttttgcaatcttagcatgttcctcttcattctttactttcttcccttta |
22930648 |
T |
|
| Q |
340 |
ccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccat |
439 |
Q |
| |
|
|||| || |||||||| ||||| | ||||||||||||||||||| || | ||||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
22930649 |
ccagaccggcattcagatgcatagagggcaaacttttcacaattatagcattaatccttcttcttatgaaaacatttcttcttgttttgataaa------ |
22930742 |
T |
|
| Q |
440 |
aacctcctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcg-cccttagagttacttttgcctttcttgaa |
538 |
Q |
| |
|
||| || |||||||||| ||||| || ||| || ||||||||||| ||| ||||||||||| ||||| |||||| | |||||||||||||| |
|
|
| T |
22930743 |
aacttcatccttttgaacattcaccattttcaatgactttgttcttccattt------tgaccagtttcctcccttggagttattcttgcctttcttgaa |
22930836 |
T |
|
| Q |
539 |
attctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcc |
638 |
Q |
| |
|
||||| ||| || | ||||| | || | |||||||||||| || ||||||||||||||||||||||||||||||| ||| || |||||| ||||| |
|
|
| T |
22930837 |
gttcttcttaacaaaatcatctctattaatagtttgaacttgcaattgttgttgaattgatctttcactacttctttcatacaccatcaattcatgtgcc |
22930936 |
T |
|
| Q |
639 |
tccaaagaactctgcatttcttcaattttcaa |
670 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||| |
|
|
| T |
22930937 |
tccaaagaactatgcaattcttcaatcttcaa |
22930968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 692
Target Start/End: Complemental strand, 9698724 - 9698555
Alignment:
| Q |
523 |
ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat |
622 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| ||||||||||| | |||||||||||||| |||| |||||||||||||||||| |||||||||| | |
|
|
| T |
9698724 |
ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac |
9698625 |
T |
|
| Q |
623 |
tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct |
692 |
Q |
| |
|
|| |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| |||| |
|
|
| T |
9698624 |
catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct |
9698555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 496 - 687
Target Start/End: Complemental strand, 43548885 - 43548694
Alignment:
| Q |
496 |
tttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaat |
595 |
Q |
| |
|
||||||||||||| ||||||| || | || ||||||||||| ||||| |||||| ||||||||||| | ||||||||||| || ||||||||||| |
|
|
| T |
43548885 |
tttgaccagtttcctccttagaatttttcttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttttagggcttgttgaat |
43548786 |
T |
|
| Q |
596 |
tgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg |
687 |
Q |
| |
|
|||||||||||| |||||||||| | || ||||| |||| || || |||| ||||| ||| ||||| ||||| || | ||||||||||| |
|
|
| T |
43548785 |
tgatctttcactgcttctttcagttaccatcgattcatgtgcttctaatgaacactgcaattcctcaatcttcaatgtcttcacatcctttg |
43548694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 528 - 616
Target Start/End: Complemental strand, 21848266 - 21848178
Alignment:
| Q |
528 |
cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc |
616 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||| | |||||||||||| | ||||||||||||||||||||| | |||||||| |
|
|
| T |
21848266 |
cctttcttgaagttcttcttatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc |
21848178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 54170845 - 54170951
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
54170845 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
54170944 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
54170945 |
ttctttc |
54170951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 409
Target Start/End: Complemental strand, 21848588 - 21848363
Alignment:
| Q |
184 |
gtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatcta |
283 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | || | || ||| |||||| |
|
|
| T |
21848588 |
gtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgattcagaatcta |
21848489 |
T |
|
| Q |
284 |
aatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaatt |
383 |
Q |
| |
|
|||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| |||||||||||| ||||| || ||||| || ||||| || |
|
|
| T |
21848488 |
aatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaaatttctcacattt |
21848389 |
T |
|
| Q |
384 |
ataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
21848388 |
gaaacactgaatcttcttcttatcaa |
21848363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 409
Target Start/End: Original strand, 54170536 - 54170761
Alignment:
| Q |
184 |
gtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatcta |
283 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | || | || ||| ||||| |
|
|
| T |
54170536 |
gtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgattcagaatctg |
54170635 |
T |
|
| Q |
284 |
aatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaatt |
383 |
Q |
| |
|
|||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| || ||||| || ||||| || |
|
|
| T |
54170636 |
aatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaaatttctcacattt |
54170735 |
T |
|
| Q |
384 |
ataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
54170736 |
gaaacactgaatcttcttcttatcaa |
54170761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 169 - 423
Target Start/End: Original strand, 17784785 - 17785040
Alignment:
| Q |
169 |
caattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaaga |
268 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||| |||||| | ||| || | ||||| || || | |
|
|
| T |
17784785 |
caatccttatttccagtcatatgattagaacaaccagtatctaaaaaccatctttctgaattgcaactctcattactagtttttgtaaccatcaataaca |
17784884 |
T |
|
| Q |
269 |
ctgtatcataatctaaatcttcttgtg-aaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgac |
367 |
Q |
| |
|
|||| | | ||||| |||||||||| | ||| | ||||||| ||| || |||||||||||||| | |||||||| ||| |||| ||||||| | |||| |
|
|
| T |
17784885 |
ctgtgtaagaatcttaatcttcttgggcaaatcttagcttgttgctcatctttctttacttgctttcctttaccagaccagcatttagaagcaaagtgac |
17784984 |
T |
|
| Q |
368 |
caaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttg |
423 |
Q |
| |
|
|||| || ||||| ||| |||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
17784985 |
caaaattctcacatttaaaacaccgaatcttcttcttatcaaaacctttcttcttg |
17785040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 687
Target Start/End: Complemental strand, 1287965 - 1287806
Alignment:
| Q |
528 |
cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta |
627 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||||| | |||||||| ||||| ||||||| ||||||||||||||| |||||||||| | || | |
|
|
| T |
1287965 |
cctttcttgaagttcttcctatcattatcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctttcagttaccatca |
1287866 |
T |
|
| Q |
628 |
attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg |
687 |
Q |
| |
|
||||| |||| || || |||||||||| ||| ||||| ||||| || | ||||||||||| |
|
|
| T |
1287865 |
attcatgtgcttctaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg |
1287806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 182 - 409
Target Start/End: Complemental strand, 41946783 - 41946556
Alignment:
| Q |
182 |
cagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatc |
281 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | || | || ||| |||| |
|
|
| T |
41946783 |
cagtcatatgattagaacaaccaatatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgactcagaatc |
41946684 |
T |
|
| Q |
282 |
taaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaa |
381 |
Q |
| |
|
| |||| ||||||| || | |||||| || || ||||||||| |||||| | |||||||| |||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
41946683 |
tgaatcatcttgtgcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagaggcataatgtccaaatttctcacat |
41946584 |
T |
|
| Q |
382 |
ttataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| |||| |||||||||||||||| |
|
|
| T |
41946583 |
ttgaaacactgaatcttcttcttatcaa |
41946556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 201185 - 201291
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
201185 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
201284 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
201285 |
ttctttc |
201291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 316022 - 316128
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
316022 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
316121 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
316122 |
ttctttc |
316128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 30409304 - 30409410
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
30409304 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
30409403 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
30409404 |
ttctttc |
30409410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 43810984 - 43811090
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
43810984 |
cccttagagtttttcttccctttcttgaagttcttcatatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
43811083 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
43811084 |
ttctttc |
43811090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 28647567 - 28647461
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||| || || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
28647567 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcttttttgatagtttgaacttgcatggcttgttgaattgatctttcattgc |
28647468 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
28647467 |
ttctttc |
28647461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 380
Target Start/End: Complemental strand, 28647878 - 28647680
Alignment:
| Q |
182 |
cagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatc |
281 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| || ||||| ||| || |||||| | |||||| | ||||| | || | || ||| |||| |
|
|
| T |
28647878 |
cagtcatatgattagaacaaccagtatctaagaaccaactttctgaattgtagctctcattactagttgttgtaaccatcatgaataatgactcaaaatc |
28647779 |
T |
|
| Q |
282 |
taaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcaca |
380 |
Q |
| |
|
| |||| ||||| | || | |||||| || || ||||||||| |||||| | |||||||| |||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
28647778 |
tgaatcatcttgcgcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagaggcataatgtccaaatttctcaca |
28647680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 41946472 - 41946366
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || |||||||| || |||| ||||| | ||||||||||| | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
41946472 |
cccttagagtttttcttccctttcttaaagttctccctatcacaatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgc |
41946373 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
41946372 |
ttctttc |
41946366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 200756 - 201101
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
200756 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
200855 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
200856 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
200955 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
200956 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
201055 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
201056 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
201101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 315593 - 315938
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
315593 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
315692 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
315693 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
315792 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
315793 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
315892 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
315893 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
315938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 30408875 - 30409220
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
30408875 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
30408974 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
30408975 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
30409074 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
30409075 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
30409174 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
30409175 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
30409220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 43810555 - 43810900
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
43810555 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
43810654 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
43810655 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
43810754 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
43810755 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
43810854 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
43810855 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
43810900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 523 - 692
Target Start/End: Complemental strand, 27187282 - 27187113
Alignment:
| Q |
523 |
ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat |
622 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| ||||||||||| | |||||||||||||| |||| |||||||||||||||||| |||||||||| | |
|
|
| T |
27187282 |
ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac |
27187183 |
T |
|
| Q |
623 |
tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct |
692 |
Q |
| |
|
|| |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| |||| |
|
|
| T |
27187182 |
catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct |
27187113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 505 - 687
Target Start/End: Complemental strand, 31355840 - 31355658
Alignment:
| Q |
505 |
tttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttc |
604 |
Q |
| |
|
|||| ||||||||||| | || | ||||||||| ||||| |||||| |||| |||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
31355840 |
tttcccccttagagtttttcttccttttcttgaagttcttcctatcattatcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttc |
31355741 |
T |
|
| Q |
605 |
actacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg |
687 |
Q |
| |
|
||| ||| |||||| | || |||||| |||| ||||| |||||||||| ||||||||| ||||| || | ||||||||||| |
|
|
| T |
31355740 |
acttcttgtttcagttaccatcaattcatgtgcttccaatgaactctgcaattcttcaatcttcaatgtcttcacatcctttg |
31355658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 43682681 - 43682789
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || |||||||| || ||||| |||||| ||||||||||| | |||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
43682681 |
cccttagagtttttcttccctttctttaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgc |
43682780 |
T |
|
| Q |
610 |
ttctttcag |
618 |
Q |
| |
|
||||||||| |
|
|
| T |
43682781 |
ttctttcag |
43682789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 44148214 - 44148108
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
44148214 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
44148115 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
44148114 |
ttctttc |
44148108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 44148643 - 44148298
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
44148643 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
44148544 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
44148543 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
44148444 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
44148443 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
44148344 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
44148343 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
44148298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 645 - 690
Target Start/End: Complemental strand, 25171159 - 25171114
Alignment:
| Q |
645 |
gaactctgcatttcttcaattttcaaagtttgcacatcctttgctt |
690 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
25171159 |
gaactctgcaattcttcaatcttcatagttttcacatcctttgctt |
25171114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 692
Target Start/End: Complemental strand, 50912884 - 50912836
Alignment:
| Q |
644 |
agaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct |
692 |
Q |
| |
|
||||||||||| ||||||||| |||| ||| | |||||||||||||||| |
|
|
| T |
50912884 |
agaactctgcagttcttcaatcttcatagtcttcacatcctttgcttct |
50912836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 423
Target Start/End: Complemental strand, 23255018 - 23254770
Alignment:
| Q |
175 |
ttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtat |
274 |
Q |
| |
|
|||||| || |||||||||||||||||| | ||||||| |||||||| ||||| |||| ||| |||||| | |||||| | ||||| || || | ||| | |
|
|
| T |
23255018 |
ttatttccaatcatatgattagaacaactagtatctaacaaccatctttctgaattgcaactctcattactagttgttgtaaccatgaataacattgtgt |
23254919 |
T |
|
| Q |
275 |
cataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaactt |
374 |
Q |
| |
|
|| ||||| |||||||||| || | ||||||| |||| |||||||| ||||||| | ||||| || || ||||||||| || | ||||||||||| |
|
|
| T |
23254918 |
cagaatctgaatcttcttgaacaatcttagcttgttgctctacattctttgcttgctttcctttactagacccgcattcagaaacaaagtgaccaaactt |
23254819 |
T |
|
| Q |
375 |
ttcacaattataacaacatatcttcttcttatcaaagcctttcttcttg |
423 |
Q |
| |
|
||||| ||| | || ||||||||||||||||| |||||||||||| |
|
|
| T |
23254818 |
ctcacatttaaagcactgaatcttcttcttatcaaaacctttcttcttg |
23254770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 8319005 - 8319111
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
8319005 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
8319104 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
8319105 |
ttctttc |
8319111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 17880980 - 17881086
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
17880980 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
17881079 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
17881080 |
ttctttc |
17881086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 27571233 - 27571339
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
27571233 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
27571332 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
27571333 |
ttctttc |
27571339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 616
Target Start/End: Complemental strand, 17160745 - 17160643
Alignment:
| Q |
514 |
tagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttct |
613 |
Q |
| |
|
|||||||| | || ||||||||||| | || ||||||| ||||||||||| | ||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
17160745 |
tagagttattcttccctttcttgaatattttcctatcataatcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttct |
17160646 |
T |
|
| Q |
614 |
ttc |
616 |
Q |
| |
|
||| |
|
|
| T |
17160645 |
ttc |
17160643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 687
Target Start/End: Original strand, 21414100 - 21414277
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| |||||| ||||||||||| |||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
21414100 |
cccttagagtttttcttccctttcttgaagttcttcctatcattatcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcactgt |
21414199 |
T |
|
| Q |
610 |
ttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg |
687 |
Q |
| |
|
||||||||| | || |||||| |||| || || ||||||| || ||| ||||| ||||| || | ||||||||||| |
|
|
| T |
21414200 |
ttctttcagttaccatcaattcatgtgcttctaatgaactcttcaattcctcaatcttcaatgtcttcacatcctttg |
21414277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 23254684 - 23254611
Alignment:
| Q |
534 |
ttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcact |
607 |
Q |
| |
|
||||| |||||| ||||| | ||||| ||||||| |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
23254684 |
ttgaagttctttctatcaaaatcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcact |
23254611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 27570804 - 27571149
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||||| ||||| || |||||| |||||||| ||||||||| || | | |||| |
|
|
| T |
27570804 |
ccattctttccttcaatagcaatattccccattccttctgcaactaagactctattatctgcaagtttcacctttgtgtttcttccagaatccacttctc |
27570903 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| || ||||||||||||||||||||||| ||||||| ||||| || | ||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
27570904 |
ttaaccatgtcttggttccagtcatatgattagaacaaccagtatctaagaaccaactttttgaattgcagctctcattactagttgttgtaaccatcat |
27571003 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||| | || | |||||| || || ||||||||| |||||| | |||||||| |||||||||||| |||||| |
|
|
| T |
27571004 |
gaataatgactcagaatctgaatcatcttgagcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagatgcataa |
27571103 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
27571104 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
27571149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 8318576 - 8318921
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
8318576 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
8318675 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
8318676 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
8318775 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| |||||||||||| ||||| |
|
|
| T |
8318776 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatag |
8318875 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
8318876 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
8318921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 23255132 - 23255072
Alignment:
| Q |
61 |
tttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgat |
121 |
Q |
| |
|
||||||||||||| ||||||| |||| || ||||| |||| | |||||||||||||||||| |
|
|
| T |
23255132 |
tttccattctttccttcaatagcaatattccccattccttctgcaactagtgttctatgat |
23255072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 530 - 687
Target Start/End: Original strand, 13270049 - 13270206
Alignment:
| Q |
530 |
tttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaat |
629 |
Q |
| |
|
||||||||| || || |||||| ||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||||| | || ||| |
|
|
| T |
13270049 |
tttcttgaagttattcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaat |
13270148 |
T |
|
| Q |
630 |
tcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg |
687 |
Q |
| |
|
||| |||| || || |||||||||| ||||||||| ||||| || | |||||| |||| |
|
|
| T |
13270149 |
tcatgtgcttctaatgaactctgcaattcttcaatcttcaatgtcttcacatcttttg |
13270206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 522 - 606
Target Start/End: Complemental strand, 42515469 - 42515385
Alignment:
| Q |
522 |
cttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcac |
606 |
Q |
| |
|
||||| ||||||||||| ||||| |||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42515469 |
ctttttcctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcac |
42515385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 8052048 - 8051942
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
8052048 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
8051949 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
8051948 |
ttctttc |
8051942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 36671707 - 36671601
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
36671707 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
36671608 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
36671607 |
ttctttc |
36671601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 685
Target Start/End: Complemental strand, 17256418 - 17256261
Alignment:
| Q |
528 |
cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta |
627 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||| | | |||||||||||| ||| |||||||||||||||||||| ||||| ||||| | || | |
|
|
| T |
17256418 |
cctttcttgaagttcttcctatcataatcatcctttctgatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatca |
17256319 |
T |
|
| Q |
628 |
attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctt |
685 |
Q |
| |
|
||||| | || |||| ||||| |||| |||| |||| ||||| |||| ||||||||| |
|
|
| T |
17256318 |
attcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatcctt |
17256261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 8052477 - 8052132
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
8052477 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
8052378 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
8052377 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
8052278 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
8052277 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
8052178 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
8052177 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
8052132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 36672136 - 36671791
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
36672136 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
36672037 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
36672036 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
36671937 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
36671936 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
36671837 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
36671836 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
36671791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 13269872 - 13269916
Alignment:
| Q |
336 |
tttaccagtccaacattcagaagcataatgaccaaacttttcaca |
380 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
13269872 |
tttaccagaccaacattctgaagcataatgtccaaatttttcaca |
13269916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 48366 - 48472
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | | |
|
|
| T |
48366 |
cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc |
48465 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
48466 |
ttctttc |
48472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 47937 - 48282
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
47937 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
48036 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
48037 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
48136 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| |||||||||||| ||||| |
|
|
| T |
48137 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatag |
48236 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
48237 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
48282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 27758053 - 27757947
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
27758053 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
27757954 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
27757953 |
ttctttc |
27757947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Original strand, 7943584 - 7943690
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
7943584 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
7943683 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
7943684 |
ttctttc |
7943690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Original strand, 7943155 - 7943500
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
7943155 |
ccattctttccttcaatagcaatattccccattccttatgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
7943254 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
7943255 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
7943354 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
7943355 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
7943454 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
7943455 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
7943500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 27758482 - 27758137
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | ||| || |||||||| |||||| |||||||| | ||||||| || | | |||| |
|
|
| T |
27758482 |
ccattctttccttcaatagcaatattccccattccttctgcaattaagactctatgatctgcaagtttcacctttgtatttcttccaggatccacttctc |
27758383 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||||||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
27758382 |
ttaaccatgtcttatttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
27758283 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | | |||||| |||||||||||| ||||| |
|
|
| T |
27758282 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctataccagaccaacattcagaggcatag |
27758183 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
27758182 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
27758137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 26312669 - 26312563
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
26312669 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
26312570 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
26312569 |
ttctttc |
26312563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 616
Target Start/End: Complemental strand, 39795051 - 39794945
Alignment:
| Q |
510 |
cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac |
609 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| ||||||| |||||||| || | |||||||||||| | ||||||||||||||||||||| | | |
|
|
| T |
39795051 |
cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc |
39794952 |
T |
|
| Q |
610 |
ttctttc |
616 |
Q |
| |
|
||||||| |
|
|
| T |
39794951 |
ttctttc |
39794945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 26313098 - 26312753
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
26313098 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
26312999 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
26312998 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
26312899 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| |||||||||||| ||||| |
|
|
| T |
26312898 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatag |
26312799 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
26312798 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
26312753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 409
Target Start/End: Complemental strand, 39795480 - 39795135
Alignment:
| Q |
64 |
ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt |
163 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| | |||| | |||||||| ||||||||||||||| | ||||||| || | | |||| |
|
|
| T |
39795480 |
ccattctttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctc |
39795381 |
T |
|
| Q |
164 |
tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa |
263 |
Q |
| |
|
| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| |||| || |||||| | |||||| | ||||| | |
|
|
| T |
39795380 |
ttaaccatgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcat |
39795281 |
T |
|
| Q |
264 |
caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa |
363 |
Q |
| |
|
|| | || ||| ||||| |||| ||||||| || | |||||| || || ||||| ||| |||||| | |||||||| ||| |||||||| ||||| |
|
|
| T |
39795280 |
gaataatgattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatag |
39795181 |
T |
|
| Q |
364 |
tgaccaaacttttcacaattataacaacatatcttcttcttatcaa |
409 |
Q |
| |
|
|| ||||| || ||||| || |||| |||||||||||||||| |
|
|
| T |
39795180 |
tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa |
39795135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 626 - 691
Target Start/End: Original strand, 25589982 - 25590047
Alignment:
| Q |
626 |
taattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttc |
691 |
Q |
| |
|
||||||| |||| ||||| ||||| |||| ||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
25589982 |
taattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttgcttc |
25590047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0336 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0336
Description:
Target: scaffold0336; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 692
Target Start/End: Complemental strand, 434 - 386
Alignment:
| Q |
644 |
agaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct |
692 |
Q |
| |
|
||||||||||| ||||||||| |||| ||| | |||||||||||||||| |
|
|
| T |
434 |
agaactctgcagttcttcaatcttcatagtcttcacatcctttgcttct |
386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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