View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_22 (Length: 368)
Name: NF15954_low_22
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 12271332 - 12270982
Alignment:
| Q |
1 |
tccaatgaagccttatttgttttctcttttaaccattttaacagagagattatcagtacaaccaactctgaggtcttttgcttaagaagcgcatccttgc |
100 |
Q |
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| T |
12271332 |
tccaatgaagccttatttgttttctcttttaaccattttaacagagagattatcagtacaaccaactctgaggtcttttgcttaagaagtgcatccttgc |
12271233 |
T |
|
| Q |
101 |
caagatgtcggagacaaagaatcaagctttattttagcttgtgctcagggacaacaaatgaatagattccttcatcctcaagaattgcatgatgcagtac |
200 |
Q |
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| T |
12271232 |
caggatgtcggagacaaagaatcaagctttattttagcttgtgctcagggacaacaaatgaatagattccttcatcctcaagaattgcatgatgcagtac |
12271133 |
T |
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| Q |
201 |
gacaaggcctgattggtttagtctaaccatactttaccgcgtattgcagttgggggaatttctcaaagatgtgactccttttctatattttcaactaaca |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12271132 |
gacaaggcctaattggtttagtctaaccatactttaccgcgtattgcagttgggggaatttctcaaagatgtgactccttttctatattttcaactaaca |
12271033 |
T |
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| Q |
301 |
ctgaacttttgtttcttaaaagctgcaaatagggtaactttttattctttt |
351 |
Q |
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| T |
12271032 |
cagaacttttgtttcttaaaaactgcaaatagggtaactttttattctttt |
12270982 |
T |
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