View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_23 (Length: 365)
Name: NF15954_low_23
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 38425458 - 38425121
Alignment:
| Q |
17 |
atgcacaattcaataaccttcggcttataaattttcatattggaggaaatacttttgctattggcttctataggacaagccacaaataatgttgttgaaa |
116 |
Q |
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| T |
38425458 |
atgcacaattcaataaccttcggcttataaattttcatattggaggaaatacttttgctattggcttctataggacaagccacaaataatgttgttgaaa |
38425359 |
T |
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| Q |
117 |
caacatcgagtctttgtaaatttcatcacatgataaaaacatctttggattctgtaattaatgttgtctttaaaaataccatctgaaagtgtttataaaa |
216 |
Q |
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| T |
38425358 |
caacatcgagtctttgtaaatttcatcacatgataaaaacatctttgaattctgtaattaatgttgtctttaaaaataccatctgaaagtgtttataaaa |
38425259 |
T |
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| Q |
217 |
acttgctggaactggcccctataccatcatgttttggttactattaagg-nnnnnnnntaaagttgtagtagctttttaacggtttctcaaacacaattc |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38425258 |
acttgctggaactggtccctataccatcatgttttggttactattaaggaaaaaaatataaagttgtagtagctttttaacggtttctcaaacacaattc |
38425159 |
T |
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| Q |
316 |
tccaccactaatccattagatccattcaaagttgtctg |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38425158 |
tccaccactaatccattagatccattcaaagttgtctg |
38425121 |
T |
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