View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_24 (Length: 348)
Name: NF15954_low_24
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 31175126 - 31174811
Alignment:
| Q |
16 |
atatggttgggctgccttttgtggacctgttggtcctgttggcaaatctgcttgtggcaagtgcttaaatgtatgtatatatgtataatgttagcacttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31175126 |
atatggttgggctgccttttgtggacctgttggtcctgttggcaaatctgcttgtggcaagtgcttaaatgtatgtatatatgtataatgttagcacttt |
31175027 |
T |
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| Q |
116 |
acttcttattttattttagtcaaatcgtttggagagaatctcacacataac-cgggttcaaatatccacgccctaaaatgtctttgcaggttacatccac |
214 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31175026 |
acttcttattttatttttgtcaaatcgtttgtagagaatctcacacataacgcgggttcaaatatccacgccctaaaatgtctttgtaggttacatcc-- |
31174929 |
T |
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| Q |
215 |
tacctaaactgtattttttctttttaagaactttctcttaaaaaacaata-nnnnnnnnaactatctcgaggtggaatcgaacctcttcgactatgtaac |
313 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
31174928 |
-acctaaactgtattttttctttgtaagaactttctcttaaaaaacaatacatttttttaactatctcgaggtggaattgaatctcttcgactatgtaac |
31174830 |
T |
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| Q |
314 |
acatttaaaatgcaaaaac |
332 |
Q |
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| ||||||||||||||||| |
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| T |
31174829 |
atatttaaaatgcaaaaac |
31174811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 177 - 332
Target Start/End: Complemental strand, 31196377 - 31196220
Alignment:
| Q |
177 |
tatccacgccctaaaatgtctttgcaggttacatccactacctaaactgtatt-ttttctttttaagaactttctcttaaaaaacaata-nnnnnnnnaa |
274 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
31196377 |
tatccacgccctaaaatgtctttgcaggttacatccattacctaaactgtatttttttctttttaagaactttctcttaaaaaacaatatttttttttaa |
31196278 |
T |
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| Q |
275 |
ctatctcgaggtggaatcgaacctcttcgactatgtaacacatttaaaatgcaaaaac |
332 |
Q |
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| T |
31196277 |
ctatctcgaggtggaatcgaatctcttcgactatgtaacaaatttaaaatgcaaaaac |
31196220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 31192624 - 31192512
Alignment:
| Q |
16 |
atatggttgggctgccttttgtggacctgttggtcctgttggcaaatctgcttgtggcaagtgcttaaatgtat-gtatatatgtataatgttagcactt |
114 |
Q |
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|||||||| | |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||| ||| || |
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| T |
31192624 |
atatggtttgactgctttttgtggacctgttggtcctgttggcaaagctgcttgtggcaagtgcttagatgtatcatatgtatgtataatgtttgcagtt |
31192525 |
T |
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| Q |
115 |
tacttcttatttt |
127 |
Q |
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|| |||||||||| |
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| T |
31192524 |
tagttcttatttt |
31192512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 31196444 - 31196375
Alignment:
| Q |
66 |
cttgtggcaagtgcttaaatgtatgtatatatgtata------atgttagcactttacttcttattttat |
129 |
Q |
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| T |
31196444 |
cttgtggcaattgcttaaatgtatgtatatatgtatatgtataatgttagcactttacttcttattttat |
31196375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 31143315 - 31143247
Alignment:
| Q |
19 |
tggttgggctgccttttgtggacctgttggtcctgttggcaaatctgcttgtggcaagtgcttaaatgtatgtat |
93 |
Q |
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||||||||||||||| ||||||| || ||||||||||| || ||||||||||||||||||||||||||| |
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| T |
31143315 |
tggttgggctgccttctgtggacatg------ctgttggcaaaggtgtttgtggcaagtgcttaaatgtatgtat |
31143247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 31206428 - 31206391
Alignment:
| Q |
57 |
gcaaatctgcttgtggcaagtgcttaaatgtatgtata |
94 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| |
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| T |
31206428 |
gcaaatatgcttgtggcaagtgcttaaatgtaagtata |
31206391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 35929145 - 35929109
Alignment:
| Q |
16 |
atatggttgggctgccttttgtggacctgttggtcct |
52 |
Q |
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|||||||||| ||||||| |||||||||||||||||| |
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| T |
35929145 |
atatggttggactgccttctgtggacctgttggtcct |
35929109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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