View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_low_33 (Length: 264)

Name: NF15954_low_33
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_low_33
NF15954_low_33
[»] scaffold1652 (3 HSPs)
scaffold1652 (1-251)||(46-296)
scaffold1652 (2-125)||(253-373)
scaffold1652 (49-120)||(336-407)
[»] scaffold0902 (3 HSPs)
scaffold0902 (51-250)||(3563-3762)
scaffold0902 (49-113)||(3468-3532)
scaffold0902 (3-39)||(3596-3632)
[»] scaffold0002 (2 HSPs)
scaffold0002 (2-239)||(165091-165313)
scaffold0002 (49-125)||(165271-165347)
[»] chr6 (6 HSPs)
chr6 (2-239)||(14248413-14248635)
chr6 (2-195)||(14316975-14317165)
chr6 (49-139)||(14351646-14351736)
chr6 (49-125)||(14248379-14248455)
chr6 (50-120)||(14316942-14317012)
chr6 (218-251)||(14317161-14317194)
[»] scaffold1176 (3 HSPs)
scaffold1176 (49-125)||(112-188)
scaffold1176 (2-127)||(32-154)
scaffold1176 (193-240)||(1273-1320)
[»] chr4 (4 HSPs)
chr4 (49-127)||(37245116-37245194)
chr4 (164-221)||(37237814-37237871)
chr4 (61-120)||(37241922-37241981)
chr4 (176-235)||(37245288-37245347)


Alignment Details
Target: scaffold1652 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 296 - 46
Alignment:
Q  1 ggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggg 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||     
T  296 ggtagagatcgacgatggagcgacagcaggagaagcagcaggaggagaagaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatgga 197  T
Q  101 gcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgagtcag 200  Q
    | ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  196 gagacagcaggagcagcagcgggagaaccagatgaagcagtcgttaaagaagagggagcactattcacagttaccggaggagacgccactggtgagtcag 97  T
Q  201 cggagggagaaatagcaggtgatggaaacggagaagacttaggtgatgatg 251  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  96 cggagggagaaatagcaggtgatggaaacggagaagacttgggtgatgatg 46  T

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Target: scaffold1652; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 373 - 253
Alignment:
Q  2 gtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgggg 101  Q
    ||||| |||||||||||||  ||||||||||  |||||||||| ||||   ||||||||||||||||||||||||||||| |||||||| |||||||| |    
T  373 gtagatatcgacgatggagtcacagcaggagcggcagcaagaggagaa---atcgtaggcgatggtgcttgagatggaggggtagagatcgacgatggag 277  T
Q  102 cgacagcaggagcagcagcgggag 125  Q
    |||||||||||| |||||| ||||    
T  276 cgacagcaggagaagcagcaggag 253  T

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Target: scaffold1652; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 407 - 336
Alignment:
Q  49 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 120  Q
    |||||||| |||| ||||||||||||||||||||||||| || |||||||| |  ||||||||||| |||||    
T  407 agaaatcgcaggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagcggcagc 336  T

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Target: scaffold0902 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 3563 - 3762
Alignment:
Q  51 aaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaaga 150  Q
    |||| ||||||||||||||||||| ||||||  ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3563 aaattgtaggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaaccagatgaagcagttggtgaaga 3662  T
Q  151 agagggagcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttaggtgatgat 250  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  3663 agagggagcactattcagaggtaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttgggggatgat 3762  T

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Target: scaffold0902; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 3468 - 3532
Alignment:
Q  49 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggag 113  Q
    |||||||| ||||| ||||||||||||||||||||||||||| |||||||| |  ||||||||||    
T  3468 agaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 3532  T

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Target: scaffold0902; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 3596 - 3632
Alignment:
Q  3 tagagatcgacgatggagcgacagcaggagaagcagc 39  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  3596 tagagatcgacgatggagtgacagcaggagcagcagc 3632  T

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Target: scaffold0002 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 165313 - 165091
Alignment:
Q  2 gtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgggg 101  Q
    |||||||||||| ||||||  |||||||||| ||||||| ||| ||||   || |||||||||||| ||||||||||||| ||||||||  | ||||| |    
T  165313 gtagagatcgaccatggagtcacagcaggagcagcagcaggaggagaa---atagtaggcgatggtccttgagatggaggggtagagatccaggatggag 165217  T
Q  102 cgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgagtcagc 201  Q
    ||||||||||||            |||||||  |||||| |||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  165216 cgacagcaggag------------aaccagagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagc 165129  T
Q  202 ggagggagaaatagcaggtgatggaaacggagaagact 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  165128 ggagggagaaatagcaggtgatggaaacggagaagact 165091  T

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Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 165347 - 165271
Alignment:
Q  49 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 125  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||| |||| |  ||||||||||||||||| ||||    
T  165347 agaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag 165271  T

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Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 14248413 - 14248635
Alignment:
Q  2 gtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgggg 101  Q
    |||||||||||| ||||||  |||||||||| ||||||| ||| ||||   || |||||||||||| ||||||||||||| ||||||||  | ||||| |    
T  14248413 gtagagatcgaccatggagtcacagcaggagcagcagcaggaggagaa---atagtaggcgatggtccttgagatggaggggtagagatccaggatggag 14248509  T
Q  102 cgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgagtcagc 201  Q
    ||||||||||||            |||||||  |||||| |||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  14248510 cgacagcaggag------------aaccagagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagc 14248597  T
Q  202 ggagggagaaatagcaggtgatggaaacggagaagact 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14248598 ggagggagaaatagcaggtgatggaaacggagaagact 14248635  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 14316975 - 14317165
Alignment:
Q  2 gtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgggg 101  Q
    ||||||||||| |||||||  ||| |||||| |||||||   | || |||||| |||||||||||| |||||||||| || ||||||||  | ||||| |    
T  14316975 gtagagatcgatgatggagtcacatcaggagcagcagca---gaaggagaaatagtaggcgatggtccttgagatggtggggtagagatccatgatggag 14317071  T
Q  102 cgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtga 195  Q
    ||||| ||||||| ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  14317072 cgacaacaggagctgcagcaggagaaccagaggaagcagacggtgaaggagagggagcactattcagaggtaccggaggagacgccactggtga 14317165  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 14351646 - 14351736
Alignment:
Q  49 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagca 139  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| ||||| |  |||||||||||  |||||||||||||| | ||||||    
T  14351646 agaaatcgtaggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagca 14351736  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 14248379 - 14248455
Alignment:
Q  49 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 125  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||| |||| |  ||||||||||||||||| ||||    
T  14248379 agaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag 14248455  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 14316942 - 14317012
Alignment:
Q  50 gaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 120  Q
    ||||||| |||||| ||||||||||| |||||||||||||| || ||||| |  ||| |||||||||||||    
T  14316942 gaaatcgcaggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagcagcagc 14317012  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 14317161 - 14317194
Alignment:
Q  218 ggtgatggaaacggagaagacttaggtgatgatg 251  Q
    ||||||||||||||||||||||| ||||||||||    
T  14317161 ggtgatggaaacggagaagacttgggtgatgatg 14317194  T

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Target: scaffold1176 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 188 - 112
Alignment:
Q  49 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 125  Q
    |||||||| ||||||||||||||||||||||||||||||||| || ||||| |  ||||||||||||||||| ||||    
T  188 agaaatcgcaggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagcagcagcaggag 112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 154 - 32
Alignment:
Q  2 gtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatgggg 101  Q
    ||||||||||| |||||||  |||||||||| ||||||| ||| ||||   || |||||||||||| ||||||||||||| ||||||||  | |||||      
T  154 gtagagatcgatgatggagtcacagcaggagcagcagcaggaggagaa---atagtaggcgatggtccttgagatggaggggtagagatccaggatggat 58  T
Q  102 cgacagcaggagcagcagcgggagaa 127  Q
    ||||| ||||||| |||  |||||||    
T  57 cgacaacaggagcggcactgggagaa 32  T

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Target: scaffold1176; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 1320 - 1273
Alignment:
Q  193 tgagtcagcggagggagaaatagcaggtgatggaaacggagaagactt 240  Q
    ||||| ||| ||||||||||| ||||| ||||||||||||||||||||    
T  1320 tgagttagctgagggagaaatcgcaggagatggaaacggagaagactt 1273  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 37245116 - 37245194
Alignment:
Q  49 agaaatcgtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaa 127  Q
    ||||||||  || ||||||||||||||||||||||||||||| |||||||| |  ||||||||||| ||| ||||||||    
T  37245116 agaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 37245194  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 37237814 - 37237871
Alignment:
Q  164 ttcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtg 221  Q
    ||||||| ||| |||||||| ||||| |||||||||||||||||||| || |||||||    
T  37237814 ttcacaggtacgggaggagatgccaccggtgagtcagcggagggagagatcgcaggtg 37237871  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 37241922 - 37241981
Alignment:
Q  61 cgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 120  Q
    ||||||||||| || |||||||||||||||||||||||| |  | ||||||||| |||||    
T  37241922 cgatggtgctttagttggaggagtagagattgacgatggagtaatagcaggagcggcagc 37241981  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 37245288 - 37245347
Alignment:
Q  176 ggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaa 235  Q
    |||| ||| ||||||||||||| |||||||||||||||    ||||||||||||||||||    
T  37245288 ggagcagatgccactggtgagttagcggagggagaaattattggtgatggaaacggagaa 37245347  T

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