View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_low_35 (Length: 248)

Name: NF15954_low_35
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_low_35
NF15954_low_35
[»] chr7 (3 HSPs)
chr7 (19-146)||(2888219-2888347)
chr7 (66-145)||(20567555-20567634)
chr7 (66-127)||(28007752-28007813)
[»] chr3 (3 HSPs)
chr3 (19-146)||(24514895-24515022)
chr3 (66-146)||(9831191-9831271)
chr3 (66-146)||(15287606-15287686)
[»] chr2 (2 HSPs)
chr2 (71-139)||(19275884-19275952)
chr2 (65-146)||(29387463-29387544)
[»] chr8 (1 HSPs)
chr8 (66-146)||(42663316-42663396)
[»] chr4 (1 HSPs)
chr4 (66-146)||(35606571-35606650)
[»] chr5 (2 HSPs)
chr5 (19-135)||(4083046-4083161)
chr5 (204-239)||(41047330-41047365)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 2888347 - 2888219
Alignment:
Q  19 gaaataccctcaccctagagccatggttttaccaatgagnnnnnnnt-atatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgatt 117  Q
    |||||| ||||||| ||||||||||||||||||||||||       | |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  2888347 gaaataacctcaccttagagccatggttttaccaatgagacaaaaattatatttgtgattcattgtagataatgtacaataagatgtgtataatttgatt 2888248  T
Q  118 aatctgacgtctcttaataatggtccacc 146  Q
    ||||||||||||||||||| |||||||||    
T  2888247 aatctgacgtctcttaatagtggtccacc 2888219  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 20567634 - 20567555
Alignment:
Q  66 atatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgattaatctgacgtctcttaataatggtccac 145  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  20567634 atatttgtgatccagtgtagataatgtacaaaaagatgtgtgtaatttgattaatctgacacctcttaatagtggtccac 20567555  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 28007752 - 28007813
Alignment:
Q  66 atatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgattaatctgacgt 127  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28007752 atatttgtgatccagtgtagataatatacaataagatgtgtgtaatttgattaatctgacgt 28007813  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 24514895 - 24515022
Alignment:
Q  19 gaaataccctcaccctagagccatggttttaccaatgagnnnnnnntatatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgatta 118  Q
    |||||| ||| ||| |||| ||||| |||||||||||||       ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  24514895 gaaataaccttaccttagaaccatgattttaccaatgagaaaaaaatatatttgtgatttagtgtagatgatgtacaataagatgtgtgtaatctgatta 24514994  T
Q  119 atctgacgtctcttaataatggtccacc 146  Q
    |||||||||||||||||| |||||||||    
T  24514995 atctgacgtctcttaatagtggtccacc 24515022  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 9831191 - 9831271
Alignment:
Q  66 atatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgattaatctgacgtctcttaataatggtccacc 146  Q
    |||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  9831191 atatttgtgatatagtgtagatggtgtacaacaagatgtgtgtaatttgattaatctgacgcctcttaatagtggtccacc 9831271  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 15287686 - 15287606
Alignment:
Q  66 atatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgattaatctgacgtctcttaataatggtccacc 146  Q
    |||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  15287686 atatttgtgatctagtgtagatggtgtacaacaagatgtgtgtaatttgattaatctgacgcctcttaatagtggtccacc 15287606  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 19275884 - 19275952
Alignment:
Q  71 tgtgattcagtgtagataatgtacaataagatgtgtgtaatttgattaatctgacgtctcttaataatg 139  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  19275884 tgtgatccagtgtagataatgtacaataagatatgtgtaatttgattaatatgacgcctcttaataatg 19275952  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 29387544 - 29387463
Alignment:
Q  65 tatatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgattaatctgacgtctcttaataatggtccacc 146  Q
    |||||||||||  ||  |||||||||||||||||||||||||||| |||||||||||||| | || |||||| |||||||||    
T  29387544 tatatttgtgacccacagtagataatgtacaataagatgtgtgtagtttgattaatctgatgcctattaatagtggtccacc 29387463  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 42663396 - 42663316
Alignment:
Q  66 atatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgattaatctgacgtctcttaataatggtccacc 146  Q
    |||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| || ||||||    
T  42663396 atatttgttatccagtgtagatgatgtacaacaagatgtgtgtaatttgattaatctgacgccttttaatagtgatccacc 42663316  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 35606571 - 35606650
Alignment:
Q  66 atatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgattaatctgacgtctcttaataatggtccacc 146  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||| || ||||||||  |||||||||    
T  35606571 atatttgtgatccagtgtagataatgtacaatatgatgtgtgt-acttgattaatctggcgcctcttaatggtggtccacc 35606650  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 4083161 - 4083046
Alignment:
Q  19 gaaataccctcaccctagagccatggttttaccaatgagnnnnnnntatatttgtgattcagtgtagataatgtacaataagatgtgtgtaatttgatta 118  Q
    |||||| ||||||| |||||||| |||||||||  ||||        ||||||||||| || |||||||||||||||||| ||||||||| | |||||||    
T  4083161 gaaataacctcaccatagagccagggttttaccggtgagagaaaaagatatttgtgatccaatgtagataatgtacaatatgatgtgtgt-acttgatta 4083063  T
Q  119 atctgacgtctcttaat 135  Q
    |||||||| ||||||||    
T  4083062 atctgacgcctcttaat 4083046  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 41047365 - 41047330
Alignment:
Q  204 ttatttgacatagattttttgcgtcactagtattat 239  Q
    |||||||||||||||||||||||||||| |||||||    
T  41047365 ttatttgacatagattttttgcgtcactggtattat 41047330  T

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