View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_39 (Length: 227)
Name: NF15954_low_39
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 41011845 - 41011912
Alignment:
| Q |
18 |
aaccattgaaaatgcagctgattaacgggttgcccgccaaaaatgacggttggccactaaagcctcca |
85 |
Q |
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| T |
41011845 |
aaccattgaaaatgcagctgattaacgggttgcccgccaaaaatgacggttggccactaaagcctcca |
41011912 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 41011974 - 41012102
Alignment:
| Q |
83 |
ccaactcgctttaatatgcctaaacaagttgaccattttggagagaaagttagaggnnnnnnnccatgagttcatttttcat-ctcaggcttctcgcatg |
181 |
Q |
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| T |
41011974 |
ccaactcgctttaatatgcctaaacaagttgaccattttggagaaaaagtta-aagaaaaaaaccgtgagtttatttttcatcctcaagcttctcgcacg |
41012072 |
T |
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| Q |
182 |
ccctattttgaatcataaaatccaaaaaat |
211 |
Q |
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| T |
41012073 |
tcctattttggatcgtaaaatccaaaaaat |
41012102 |
T |
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