View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_low_4 (Length: 647)

Name: NF15954_low_4
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_low_4
NF15954_low_4
[»] chr5 (12 HSPs)
chr5 (1-632)||(39576073-39576704)
chr5 (19-632)||(39572067-39572680)
chr5 (433-528)||(2326514-2326609)
chr5 (275-337)||(4100468-4100530)
chr5 (253-337)||(2326343-2326427)
chr5 (50-152)||(225549-225651)
chr5 (430-535)||(3561686-3561791)
chr5 (275-337)||(4146517-4146579)
chr5 (24-150)||(2326108-2326234)
chr5 (560-631)||(4145584-4145655)
chr5 (275-333)||(225362-225420)
chr5 (282-397)||(3561541-3561653)
[»] chr8 (14 HSPs)
chr8 (1-530)||(9841801-9842334)
chr8 (19-150)||(9903113-9903244)
chr8 (182-328)||(9860641-9860787)
chr8 (441-530)||(9860447-9860536)
chr8 (432-514)||(9902767-9902849)
chr8 (275-340)||(27360976-27361041)
chr8 (439-529)||(9846852-9846942)
chr8 (19-144)||(9847220-9847345)
chr8 (19-152)||(9860823-9860956)
chr8 (289-397)||(9902878-9902986)
chr8 (5-140)||(27361197-27361333)
chr8 (561-630)||(9846738-9846805)
chr8 (565-632)||(9902661-9902728)
chr8 (563-631)||(9841700-9841768)
[»] chr1 (4 HSPs)
chr1 (259-625)||(46672088-46672454)
chr1 (442-630)||(5054375-5054564)
chr1 (260-632)||(46445706-46446078)
chr1 (18-333)||(5053977-5054277)
[»] chr3 (5 HSPs)
chr3 (455-627)||(49385962-49386133)
chr3 (439-632)||(7256555-7256745)
chr3 (275-340)||(7256838-7256903)
chr3 (433-516)||(49385850-49385934)
chr3 (50-150)||(7257005-7257105)
[»] scaffold0658 (2 HSPs)
scaffold0658 (275-340)||(2856-2921)
scaffold0658 (5-140)||(2564-2700)
[»] chr6 (3 HSPs)
chr6 (275-340)||(112644-112709)
chr6 (562-631)||(112940-113009)
chr6 (430-530)||(112805-112905)
[»] chr4 (1 HSPs)
chr4 (62-119)||(894898-894955)


Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Complemental strand, 39576704 - 39576073
Alignment:
Q  1 tatattataccacaaaactagctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatca 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39576704 tatattataccacaaaactagctatgtcggagtacttggaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccctca 39576605  T
Q  101 atctttgtcaattgtttggtcttgacattgtaactaaaatgtatgtttttctcgtttgtcaacatatttcttattggacgtagagctactcgaatgataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39576604 atctttgtcaattgtttggtcttgacattgtaactaaaatgtatgtttttctcgtttgtcaacatatttcttattggacgtatagctactcgaatgataa 39576505  T
Q  201 tttgatcgttgatccacagacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagaga 300  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576504 tttgatcgttgatccacaaacgaaatatcgcactcataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagaga 39576405  T
Q  301 ccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatccataaagac 400  Q
    ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  39576404 ccattctcctgaatcaaaatccaaagtgtagatttgatatcttttctgaaaatgatctttatacacaatgcaagaaagacaatttcccatccataaagac 39576305  T
Q  401 ttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgtta 500  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39576304 ttcagaggcggacgaccaagcgttgacacagggggaaatgaatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgtta 39576205  T
Q  501 tccagtaaagatcattgcctccactataaattggtcgctgaaaagagaaccccttaaggggagcttcttttctagctatttctttccacgagttatcaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576204 tccagtaaagatcattgcctccactataaattggtcgctgaaaagagaaccccttaaggggagcttcttttctagctatttctttccacgagttatcaat 39576105  T
Q  601 tccaattctaagtgcatagaaaacataccaaa 632  Q
    ||||||||||||||||||||||||||||||||    
T  39576104 tccaattctaagtgcatagaaaacataccaaa 39576073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 632
Target Start/End: Complemental strand, 39572680 - 39572067
Alignment:
Q  19 tagctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgtttg 118  Q
    |||||||||| ||||||||| ||||||||||||||| || |||||||||||||      |||||| |||||||||| | ||||||||||| |||||||||    
T  39572680 tagctatgtcagagtacttggaaatgaaaaaagactattcgtgtgaagccata------aatcactcgaggcaatgtcctcaatctttgtaaattgtttg 39572587  T
Q  119 gtcttgacattgtaactaaaatgtatgtttttctcgtttgtcaacatatttcttattggacgtag------agctactcgaatgataatttgatcgttga 212  Q
    || |||| ||||||| |||||||||||||||||  ||||||||||||||||  ||||||| ||||      |||||||||||||||||||||||||||||    
T  39572586 gttttgatattgtaattaaaatgtatgtttttcctgtttgtcaacatatttactattggatgtagtcatagagctactcgaatgataatttgatcgttga 39572487  T
Q  213 tccacagacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctga 312  Q
    |||| |||| ||||||| || | ||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||||||||| |||    
T  39572486 tccatagacaaaatatctcaatcataatatcaagctggttaccacaagcagcaacataatcaaaaggtcccatctcatgataaggagaccattttcttga 39572387  T
Q  313 atcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcgga 412  Q
    |||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||| || |||| ||||||||||| |||||| ||| |||    
T  39572386 atcaaaatccaaaatgtagattggatatcttttttgaaaatgatctttatacacaatgcaagaaaagcgattttccatccataaaaacttcacaggtgga 39572287  T
Q  413 cgaccaagcgttgacacagggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagat 512  Q
    |||||| || |  ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39572286 cgaccacgcatcaacacaggtggaaatggatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgttatccaataaagat 39572187  T
Q  513 cattgcctccactataaattggtcgctgaaaagagaaccccttaaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaag 612  Q
    |||| |||||||||||||||||| ||| |||||||||| ||  || ||| |||||||||||||||||||||| ||| |||||||||| ||||||||| ||    
T  39572186 cattacctccactataaattggttgcttaaaagagaactcccaaaagggtgcttcttttctagctatttcttaccatgagttatcaactccaattcttag 39572087  T
Q  613 tgcatagaaaacataccaaa 632  Q
      ||||||||||||||||||    
T  39572086 aacatagaaaacataccaaa 39572067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 433 - 528
Target Start/End: Original strand, 2326514 - 2326609
Alignment:
Q  433 gggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactata 528  Q
    ||||| |||||||||||| |  ||||||||||| ||||||| |||||||||||||||||  | |||||||||||||||||||||| ||||||||||    
T  2326514 gggaagtggatattctcgcataataatttccttgtcaacattcatcacaatcacttccttttctgttatccagtaaagatcattgtctccactata 2326609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 4100468 - 4100530
Alignment:
Q  275 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 337  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  4100468 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttga 4100530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 2326343 - 2326427
Alignment:
Q  253 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 337  Q
    ||||| || ||| |||||||  || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2326343 accacaagtagccacataatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttga 2326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 225651 - 225549
Alignment:
Q  50 agactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgtttggtcttgacattgtaactaaaatgtatgtttt 149  Q
    |||||||| ||||||||||||||||||| |||||||    || |||| ||||||||||||| |||| | ||||||||||||||||||||||| ||| |||    
T  225651 agactgttggtgtgaagccatacttcaatatcacccacaacagtgccctcaatctttgtcagttgtctagtcttgacattgtaactaaaatgcatggttt 225552  T
Q  150 tct 152  Q
    |||    
T  225551 tct 225549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 430 - 535
Target Start/End: Original strand, 3561686 - 3561791
Alignment:
Q  430 agggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataa 529  Q
    |||||||| |||||||||||  || |||| |||||| |||||||||||||||||||||   || |||  ||||||||||||||||||||| |||||||||    
T  3561686 agggggaagtggatattctctgacaataacttccttgtcaacatccatcacaatcactgattcctttagtatccagtaaagatcattgccaccactataa 3561785  T
Q  530 attggt 535  Q
    | ||||    
T  3561786 actggt 3561791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 4146579 - 4146517
Alignment:
Q  275 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 337  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||    
T  4146579 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttga 4146517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 2326108 - 2326234
Alignment:
Q  24 atgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgtttggtctt 123  Q
    |||||||||||| ||  |||||||  | ||||||||||||||| |||||||||||||  |||    ||||| |  ||||||||||||||||  |||| ||    
T  2326108 atgtcggagtacgtggcaatgaaattaaactgttagtgtgaagacatacttcaaaatggcccacatcaatgtctccaatctttgtcaattgcctggtatt 2326207  T
Q  124 gacattgtaactaaaatgtatgttttt 150  Q
     |||||||||| |||||| ||||||||    
T  2326208 cacattgtaaccaaaatgaatgttttt 2326234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 631
Target Start/End: Complemental strand, 4145655 - 4145584
Alignment:
Q  560 ggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaa 631  Q
    ||||||||||||| |||||| |||||||| ||| |||| | ||||||||||||  ||||||| |||||||||    
T  4145655 ggagcttcttttcaagctatctctttccatgagctatctactccaattctaagcacatagaatacataccaa 4145584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 225420 - 225362
Alignment:
Q  275 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagat 333  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||| || ||||||||    
T  225420 aaaggtcagatctcatgataaagagaccattttcttgcatcaaaatctaacatgtagat 225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 397
Target Start/End: Original strand, 3561541 - 3561653
Alignment:
Q  282 ccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggca 381  Q
    ||||||| |||||||| ||||||||||||||||  | |||||||||||| |||||| || | ||   ||   |||||| || || |||||||||||||      
T  3561541 ccatctcgtgataaagtgaccattttcctgaattgatatccaaaatgtaaatttgaaatgtttt---aatgggatcttcatgcacaatgcaagaaaggtg 3561637  T
Q  382 atttcccatccataaa 397  Q
    ||||||||||||||||    
T  3561638 atttcccatccataaa 3561653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 9842334 - 9841801
Alignment:
Q  1 tatattataccacaaaact-agctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatc 99  Q
    ||||||||| || |||||| |||||||  ||||||| ||  |||||||  ||||||||||||||||| ||||||||||| |  ||   | ||||| | ||    
T  9842334 tatattatagcagaaaacttagctatgcaggagtacctggcaatgaaactagactgttagtgtgaagacatacttcaaagttgccaacgtcaatgtcctc 9842235  T
Q  100 aatctttgtcaattgtttggtcttgacattgtaactaaaatgtatgtttttctcgtttgtcaacatatttcttattggac------gtagagctactcga 193  Q
    |||||||||||||||  ||||||| |||||||||| ||||||||||| ||    |  || ||| | ||||| |||||| |      |||||  |||||||    
T  9842234 aatctttgtcaattgcctggtcttcacattgtaaccaaaatgtatgtattgaaggcctggcaataaatttcctattgggctttgaggtagacgtactcga 9842135  T
Q  194 atgataatttgatcgttgatccacagacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgat 293  Q
    | ||||||||||||||||||||||| ||||||  || ||    || ||||||||   | ||||| |||||  |||||||  |||||||||||||||||||    
T  9842134 aagataatttgatcgttgatccacaaacgaaacttcacatccgtagtattaagcctatgaccacaagcagacacataatcaaaaggtcccatctcatgat 9842035  T
Q  294 aaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatcca 393  Q
     ||||||||||||||||||||||||||||| |||||||||||||||| || | |   ||  |||||||  |  |||||||||||||| ||||||||||||    
T  9842034 gaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtactat---aagtatctttagtcgcaatgcaagaaaggcgatttcccatcca 9841938  T
Q  394 taaagacttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctca 493  Q
    ||||    ||  | |||||| |  | || |      || ||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||  |||    
T  9841937 taaaagtatcgcaagcggaccaaaacgcatatttctagagggaagtggatattctcgtacaatagtttccttgtcaacatccatcacaatcactttgtca 9841838  T
Q  494 tttgttatccagtaaagatcattgcctccactataaa 530  Q
    | |||||||||||||||||||||||||||||||||||    
T  9841837 tatgttatccagtaaagatcattgcctccactataaa 9841801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 9903244 - 9903113
Alignment:
Q  19 tagctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgtttg 118  Q
    ||||||||  ||||||||||| |||||||  |||||||||||||||| |||||||| |||||| |||  | ||||| | ||||||||| |||||||||||    
T  9903244 tagctatggtggagtacttgacaatgaaactagactgttagtgtgaaaccatactttaaaatctcccacgtcaatgtcctcaatctttatcaattgtttg 9903145  T
Q  119 gtcttgacattgtaactaaaatgtatgttttt 150  Q
    ||||| |||||||||| |||||| || |||||    
T  9903144 gtcttcacattgtaacaaaaatgcatcttttt 9903113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 182 - 328
Target Start/End: Complemental strand, 9860787 - 9860641
Alignment:
Q  182 agagctactcgaatgataatttgatcgttgatccacagacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtc 281  Q
    |||||||||  || ||||||||||| ||||||||||| |||||||  | ||   | ||| | |||||  | ||||| |||||  |||||||  |||||||    
T  9860787 agagctactttaaagataatttgatggttgatccacaaacgaaatgccacaaacaaaatctgaagctcttgaccacaagcagacacataatcaaaaggtc 9860688  T
Q  282 ccatctcatgataaagagaccattttcctgaatcaaaatccaaaatg 328  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||    
T  9860687 ccatctcatgataaagagaccattttcctgaatcatgatccaaaatg 9860641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 441 - 530
Target Start/End: Complemental strand, 9860536 - 9860447
Alignment:
Q  441 gatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaa 530  Q
    ||||||||||||  ||||||| | | ||||||||||| |||||||||||||  ||||||||||| |||| ||||||||||||||||||||    
T  9860536 gatattctcgtataataatttgcctgtcaacatccatgacaatcacttccttttttgttatccaataaatatcattgcctccactataaa 9860447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 432 - 514
Target Start/End: Complemental strand, 9902849 - 9902767
Alignment:
Q  432 ggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatca 514  Q
    |||||| ||||||||||||||  ||||||||||| ||||||||||||||||||||||| |  || | ||||||||||||||||    
T  9902849 ggggaagtggatattctcgtagaataatttccttgtcaacatccatcacaatcacttctttgttcgatatccagtaaagatca 9902767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 27361041 - 27360976
Alignment:
Q  275 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 340  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  27361041 aaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatat 27360976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 439 - 529
Target Start/End: Complemental strand, 9846942 - 9846852
Alignment:
Q  439 tggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataa 529  Q
    |||||| |||||||   |||||||||| |||||||| | |||||||||||||| | |||  ||||| ||||||||||||||||||||||||    
T  9846942 tggataatctcgtaaagtaatttccttgtcaacatcgaacacaatcacttccttaattgacatccaataaagatcattgcctccactataa 9846852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 9847345 - 9847220
Alignment:
Q  19 tagctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgtttg 118  Q
    |||||||| |||||||||||  |||||||  ||| |||||||||||||||||||||||| ||  |||    | ||| | | |||||| ||||||||  ||    
T  9847345 tagctatgccggagtacttggcaatgaaactagattgttagtgtgaagccatacttcaatatttccctcatcgatgtccttaatcttagtcaattgcctg 9847246  T
Q  119 gtcttgacattgtaactaaaatgtat 144  Q
    ||||| |||||||||| |||||||||    
T  9847245 gtcttcacattgtaaccaaaatgtat 9847220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 9860956 - 9860823
Alignment:
Q  19 tagctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgtttg 118  Q
    ||||||||  ||||||| ||  |||||||  | ||||||| |||||  |||||| ||||||||||||    ||||||| || ||| ||||||||||| |     
T  9860956 tagctatgctggagtacatggcaatgaaactaaactgttaatgtgagaccatacctcaaaatcacccacatcaatgccctcgatcattgtcaattgtcta 9860857  T
Q  119 gtcttgacattgtaactaaaatgtatgtttttct 152  Q
    || ||||||||||||| |||||| ||||||||||    
T  9860856 gttttgacattgtaaccaaaatgaatgtttttct 9860823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 397
Target Start/End: Complemental strand, 9902986 - 9902878
Alignment:
Q  289 atgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttccc 388  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| |  ||  | || | |  | ||||||||  || |||||||||||||| |||| ||    
T  9902986 atgataaaaagaccattttcttgaatcaaaatccaaaatgtagatattgtaagttttataatgaggatctttacgcacaatgcaagaaaggcgattttcc 9902887  T
Q  389 atccataaa 397  Q
    |||||||||    
T  9902886 atccataaa 9902878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 27361333 - 27361197
Alignment:
Q  5 ttataccacaaaac-tagctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatc 103  Q
    |||||||| ||||| ||||||||| |||| |||||  || ||||  ||| |||| || ||||||||||| ||| ||| ||||   ||||||||||||||     
T  27361333 ttataccagaaaacctagctatgttggagcacttggcaacgaaactagagtgttggtatgaagccatacatcataattacccactgcaatgccatcaatt 27361234  T
Q  104 tttgtcaattgtttggtcttgacattgtaactaaaat 140  Q
    ||||||| || | | |||||||||||||||| |||||    
T  27361233 tttgtcagttctctagtcttgacattgtaacaaaaat 27361197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 561 - 630
Target Start/End: Complemental strand, 9846805 - 9846738
Alignment:
Q  561 gagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacatacca 630  Q
    ||||||||||||||| ||| |||||||| |||||||| ||||||||||| |  ||| |||||||||||||    
T  9846805 gagcttcttttctagttatctctttccatgagttatctattccaattctta--gcacagaaaacatacca 9846738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 9902728 - 9902661
Alignment:
Q  565 ttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaa 632  Q
    ||||||||||||||| ||| |||| |||||||| ||||| ||||| ||   |||||||||||||||||    
T  9902728 ttcttttctagctatctctctccatgagttatctattccgattcttagcatatagaaaacataccaaa 9902661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 631
Target Start/End: Complemental strand, 9841768 - 9841700
Alignment:
Q  563 gcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaa 631  Q
    ||||||||| ||||||| |||||||| |  ||||| ||||| ||||| ||  |||||||||||||||||    
T  9841768 gcttcttttttagctatctctttccatgcattatctattccgattctcagcacatagaaaacataccaa 9841700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 259 - 625
Target Start/End: Original strand, 46672088 - 46672454
Alignment:
Q  259 agcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatct 358  Q
    |||||| |||||||  ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||   |  | ||  | ||||    
T  46672088 agcagccacataatcaaaatgtcccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagatttgatatgcttcattaattttatct 46672187  T
Q  359 ttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgtacgataa 458  Q
    || |||| |||||||||||||  |||||||||| ||||| | |   ||     || | || || |   || || ||||| ||||||||||| ||| ||||    
T  46672188 ttgtacacaatgcaagaaaggtgatttcccatcaataaaaaatctggaactttaccaacatgcatcagcatagtgggaagtggatattctcatacaataa 46672287  T
Q  459 tttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgc--tgaaaagagaacccctta 556  Q
    ||||  ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| || | ||  || |||  |  ||  |||    
T  46672288 tttctctatcaacatccatcacaattacttcatcatttgttattcagtaaagatcattgcctccactataaagtgattgccatggaaaatg--ccgatta 46672385  T
Q  557 aggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaaca 625  Q
     || ||||||||||||||||||| |||||||| || ||||| |||| |||||| ||  |||||||||||    
T  46672386 tggcgagcttcttttctagctatctctttccatgaattatctattctaattctcagcacatagaaaaca 46672454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 442 - 630
Target Start/End: Original strand, 5054375 - 5054564
Alignment:
Q  442 atattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgctga 541  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||| |  | || ||    
T  5054375 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatcattgcctccactataaagtatttgccga 5054474  T
Q  542 aaagagaaccccttaaggggagc-ttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacatacca 630  Q
    ||| |   ||| | ||||||||| || |||||||||||| || |||||||||||||| ||||  ||||| ||  ||||||||||||||||    
T  5054475 aaaaaattcccttgaaggggagcttttttttctagctatctcgttccacgagttatctattcttattcttagcacatagaaaacatacca 5054564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 260 - 632
Target Start/End: Complemental strand, 46446078 - 46445706
Alignment:
Q  260 gcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctt 359  Q
    ||||| |||||||  ||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||   |  | ||  | |||||    
T  46446078 gcagccacataatcaaaatgtcccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagatttgatatgcttcataaatttcatctt 46445979  T
Q  360 tatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgaccaagcgttgacacagggggaaatggatattctcgtacgataat 459  Q
    ||||   ||||||||||||   || ||||||| ||||| |  |  ||    ||  |||  || ||| ||||  ||||| ||||||||||  ||| |||||    
T  46445978 tatatgcaatgcaagaaagatgatctcccatcgataaaaatattggaactcgatcaccgggcattggcacattgggaagtggatattcttctacaataat 46445879  T
Q  460 ttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgctgaaaagagaaccccttaagg 559  Q
    |||  ||||||||||||| ||||| |  || ||| |||||||||||||||||||||||||||||||||||| |||| ||     | | ||||  | | |     
T  46445878 ttctctatcaacatccattacaattatatcatcaattgttatccagtaaagatcattgcctccactataaagtggttgccatgtaaaaaaccaatcacga 46445779  T
Q  560 ggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaa 632  Q
    |||||||||||||||||||| |||||||| || ||||| ||||||||||| |   ||||||||||||||||||    
T  46445778 ggagcttcttttctagctatctctttccatgaattatctattccaattcttaacacatagaaaacataccaaa 46445706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 5053977 - 5054277
Alignment:
Q  18 ctagctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgttt 117  Q
    ||||||||||||||||||||| ||||||||  | ||||||   |||| ||||||| |||||||  |||  || |||||| || ||||||||||| |||||    
T  5053977 ctagctatgtcggagtacttggaaatgaaactaaactgttgacgtgaggccatacctcaaaattgcccatggtaatgccctcgatctttgtcaaatgttt 5054076  T
Q  118 ggtcttgacattgtaactaaaatgtatgtttttctcgtttgtcaacatatttcttattggacgtagagctactcgaatgataatttgatcgttgatccac 217  Q
    ||||||||||||||||| |||||||||||       |||||       || || | ||  | |||||| ||||  || ||| ||||||||||||||||||    
T  5054077 ggtcttgacattgtaaccaaaatgtatgt-------gtttg-------atgtc-tcttccaagtagagatactttaaagatgatttgatcgttgatccac 5054161  T
Q  218 agacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaa 317  Q
    | |||||||| | ||   | | ||| |||||  | ||| | ||||||||||||||  ||||||||||||||||||||| ||||||||||||| | |||||    
T  5054162 aaacgaaataccacatacaaagtatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaa 5054261  T
Q  318 aatccaaaatgtagat 333  Q
    |||||||||| |||||    
T  5054262 aatccaaaatatagat 5054277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 455 - 627
Target Start/End: Original strand, 49385962 - 49386133
Alignment:
Q  455 ataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgctgaaaagagaacccct 554  Q
    |||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||| |||||||||| || ||||  ||  ||  |  |||  |    
T  49385962 ataatttccttaacaacattcatcacaatcacttcctctcttgttatccagtaaagatcatttcctccactat-aagtggtttctataacaaacaccaat 49386060  T
Q  555 taaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacata 627  Q
    |||||||||||||||||||| |||| |||||||| |||||||  ||||||||||| ||  |||||||||||||    
T  49386061 taaggggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacata 49386133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 439 - 632
Target Start/End: Complemental strand, 7256745 - 7256555
Alignment:
Q  439 tggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgc 538  Q
    |||||| ||||| || ||| ||||||| |||||||| |||||||||||||| ||  ||||||| ||||||||||||||||||||| |||||| |  |       
T  7256745 tggataatctcgaacaatagtttccttttcaacatctatcacaatcacttcatccattgttattcagtaaagatcattgcctccattataaagtattt-- 7256648  T
Q  539 tgaaaagagaaccccttaaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaa 632  Q
    || | | | ||    ||| ||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||| ||||| ||||||||||||    
T  7256647 tgcatataaaatgt-ttacggggagcttcttttctagctatttctttccatgagttatctactccaattcttagtacatagtaaacataccaaa 7256555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 7256903 - 7256838
Alignment:
Q  275 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 340  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  7256903 aaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagatttgatat 7256838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 516
Target Start/End: Complemental strand, 49385934 - 49385850
Alignment:
Q  433 gggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctc-atttgttatccagtaaagatcatt 516  Q
    ||||| || ||||||| |||| |||||||||||||||| || ||||||||||||||  ||  ||||||||| |||||||||||||    
T  49385934 gggaagtgcatattcttgtacaataatttccttatcaatattcatcacaatcactttttctctttgttatctagtaaagatcatt 49385850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 7257105 - 7257005
Alignment:
Q  50 agactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgtttggtcttgacattgtaactaaaatgtatgtttt 149  Q
    |||||||||||||||  ||||||||||||||  |||    ||||| | |||||||| ||||||||  ||||||| ||||| |||| ||||| ||||||||    
T  7257105 agactgttagtgtgagaccatacttcaaaattgcccattccaatgtcctcaatcttagtcaattgcctggtcttcacattataaccaaaatatatgtttt 7257006  T
Q  150 t 150  Q
    |    
T  7257005 t 7257005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 2856 - 2921
Alignment:
Q  275 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 340  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  2856 aaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatat 2921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 2564 - 2700
Alignment:
Q  5 ttataccacaaaac-tagctatgtcggagtacttgaaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccatcaatc 103  Q
    |||||||| ||||| ||||||||| |||| |||||  || ||||  ||| |||| || ||||||||||| ||| ||| ||||   ||||||||||||||     
T  2564 ttataccagaaaacctagctatgttggagcacttggcaacgaaactagagtgttggtatgaagccatacatcataattacccactgcaatgccatcaatt 2663  T
Q  104 tttgtcaattgtttggtcttgacattgtaactaaaat 140  Q
    ||||||| || | | |||||||||||||||| |||||    
T  2664 tttgtcagttctctagtcttgacattgtaacaaaaat 2700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 112644 - 112709
Alignment:
Q  275 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 340  Q
    ||||| ||||||||||||||||||| |||||||||| |||| |||||||||   ||||||||||||    
T  112644 aaaggccccatctcatgataaagagtccattttcctaaatccaaatccaaagcatagatttgatat 112709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 631
Target Start/End: Original strand, 112940 - 113009
Alignment:
Q  562 agcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaa 631  Q
    ||||| |||||||||||| |||||||| | |||||||| ||||||| | ||  | |||||||||||||||    
T  112940 agctttttttctagctatctctttccatgtgttatcaactccaattgttaggacgtagaaaacataccaa 113009  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 530
Target Start/End: Original strand, 112805 - 112905
Alignment:
Q  430 agggggaaatggatattctcgtacgataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataa 529  Q
    |||||| | |||||| |||| ||  ||||||||| | ||||||||||||||| ||||| | ||  |||||||||| |||| ||||||  ||||| |||||    
T  112805 aggggggagtggatactctcttataataatttccctgtcaacatccatcacagtcactccatcccttgttatccaataaatatcattttctccattataa 112904  T
Q  530 a 530  Q
    |    
T  112905 a 112905  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 894955 - 894898
Alignment:
Q  62 tgaagccatacttcaaaatcacccgaggcaatgccatcaatctttgtcaattgtttgg 119  Q
    |||||||||||||||||| ||||| |  |||| || ||||||||||||||||||||||    
T  894955 tgaagccatacttcaaaagcacccaaatcaataccctcaatctttgtcaattgtttgg 894898  T

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