View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_44 (Length: 213)
Name: NF15954_low_44
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_44 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 23482898 - 23482721
Alignment:
| Q |
21 |
ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctccccttctctcttgttttccggcca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23482898 |
ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctccccttctctcttgttttccggcca |
23482799 |
T |
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| Q |
121 |
ccgtgagttgccattggaaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatgtttattt |
198 |
Q |
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| T |
23482798 |
ccgtgagttgccattggaaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatgtttattt |
23482721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 34906117 - 34905939
Alignment:
| Q |
21 |
ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctcccc-ttctctcttgttttccggcc |
119 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
34906117 |
ttgaattcctctcttcttcctctacaaaagccatcaatttttttttagattggagaagtttaattttcgagatctcccccttctctcttgtttttcggcc |
34906018 |
T |
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| Q |
120 |
accgtgagttgccattggaaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatgtttattt |
198 |
Q |
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| T |
34906017 |
accgtgagttgccattgagaaaaccaaacccaacatattcttcctcatgatgtcagcaacaaaacccctatgtttattt |
34905939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 23473402 - 23473224
Alignment:
| Q |
21 |
ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctcccc-ttctctcttgttttccggcc |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
23473402 |
ttgaattcctctcttcttcctctacaaaagccctcaatttatttttagattggagaagtttaatttttgagacttcccccttctctcttgttttccggcc |
23473303 |
T |
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| Q |
120 |
accgtgagttgccattggaaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatgtttattt |
198 |
Q |
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|| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
23473302 |
actgtgagttgccattgggaaaatcaaacccatcatattcttcctcatgatgtcagcaacaaaacctcgatgtttattt |
23473224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 11236018 - 11236196
Alignment:
| Q |
21 |
ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctcccc-ttctctcttgttttccggcc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11236018 |
ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctcccccttctctcttgttttccggcc |
11236117 |
T |
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| Q |
120 |
accgtgagttgccattggaaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatgtttattt |
198 |
Q |
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| T |
11236118 |
accgtgagttgccattgggaaaaccaaacccaccatattcttcctcgtgatgtcagcaacaaaacccctatgtttattt |
11236196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 52610218 - 52610396
Alignment:
| Q |
21 |
ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctcccc-ttctctcttgttttccggcc |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
52610218 |
ttgaattcctctcttcttcctctacaaaagccctcaatttatttatagattggagaagtttaatttttgagatctcccccttctttcttgttttccggcc |
52610317 |
T |
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| Q |
120 |
accgtgagttgccattggaaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatgtttattt |
198 |
Q |
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| T |
52610318 |
accgtgagttgccatttggaaaaccaaacccaccatattctttctcatgatgtcagcaacaaaacccctatgtttattt |
52610396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 22627922 - 22627861
Alignment:
| Q |
24 |
aattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatt |
85 |
Q |
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||||||||||| || |||||||||||||| |||||||||| ||||||| |||||||||||| |
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| T |
22627922 |
aattcctctctctttcctctacaaaagcccgcaatttatttctagattggagaagtttaatt |
22627861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 51825188 - 51825147
Alignment:
| Q |
157 |
ttcttcctcatgatgtcagcaacaaaacccctatgtttattt |
198 |
Q |
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||||||||||| ||||| |||||||||||||||| ||||||| |
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| T |
51825188 |
ttcttcctcattatgtctgcaacaaaacccctatatttattt |
51825147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 3865 - 3807
Alignment:
| Q |
30 |
tctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaattttt |
88 |
Q |
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||||||||| |||| |||||||||||||||||||| |||||| | |||||| |||||| |
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| T |
3865 |
tctcttcttcctcttcaaaagccctcaatttatttggagattggaaaagtttgattttt |
3807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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