View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15954_low_5 (Length: 619)

Name: NF15954_low_5
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15954_low_5
NF15954_low_5
[»] chr4 (4 HSPs)
chr4 (13-619)||(25216647-25217254)
chr4 (202-395)||(1970069-1970261)
chr4 (584-619)||(1969903-1969938)
chr4 (408-519)||(1969934-1970048)
[»] chr6 (2 HSPs)
chr6 (230-283)||(24887415-24887468)
chr6 (230-283)||(24937639-24937692)
[»] chr5 (2 HSPs)
chr5 (218-305)||(9878016-9878103)
chr5 (236-283)||(28322251-28322298)
[»] chr7 (1 HSPs)
chr7 (191-233)||(44317232-44317274)
[»] chr3 (3 HSPs)
chr3 (206-256)||(13635611-13635661)
chr3 (227-256)||(36895399-36895428)
chr3 (236-304)||(18268007-18268075)
[»] chr8 (1 HSPs)
chr8 (223-256)||(27733884-27733917)
[»] chr2 (1 HSPs)
chr2 (230-294)||(32102856-32102920)
[»] chr1 (2 HSPs)
chr1 (228-284)||(3451864-3451920)
chr1 (217-265)||(26777360-26777408)


Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 619
Target Start/End: Original strand, 25216647 - 25217254
Alignment:
Q  13 attatactaacaataaaggaatgcaaatataggatgataaaagaacactatctttgatttgattgtgaaaatttaactttcttgaagagaggcatcacct 112  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25216647 attatactaacaataaaggcatgcaaatatacgatgataaaagaacactatctttgatttgattgtgaaaatttaactttcttgaagagaggcatcacct 25216746  T
Q  113 agttgctttattggcctcaaataagattgcctcttgcggtatcgtagtgtatt--gtattaaaaatatgatagcaaactcttgcaccggcatttttgatt 210  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  25216747 agttgctttattggcctcaaataagattgtctcttgcggtatcgtagtgtattttgtattaaaaatatgatagcaaactcttgcaccgacatttttgatt 25216846  T
Q  211 gaaagcgtgtctggtgtccgacatgacaccaacacatgtgattacagacaattaatttatttcctcaaattattgttagtgttggcgtgtcagtgcttca 310  Q
    ||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25216847 gaaagtgtgtctggcgtctgacatgacaccaacacatgtgactacagacaattaatttatttcctcaaattattattagtgttggcgtgtcagtgcttca 25216946  T
Q  311 tagattgcaacagttaatcactaaccgaatacaacccaaaatccttcataggaaagttttggctgatttccgtcattatccaaaagaannnnnnncaaga 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  25216947 tagattgcaacagttaatcactaaccgaatacaacccaaaatccttcataggaaagttttggctgatttccgtcattatccaaaagaatttttttcaaga 25217046  T
Q  411 ttcatattgctttaacaaattatatgaactttttctgtctagagcattgttacaataatgnnnnnnntgaacttggttgttaattgatgacaacaggcag 510  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||    
T  25217047 ttcatattgctttaacaaattatatgaactttttctatctagagcattgttactataatg-aaaaaatgaacttggttgttaattgatgacaacaggcag 25217145  T
Q  511 attttgatggaaatggcaccttgaattgtgaagagttcatcacaatgagtgttcacatgagaaggcttggaaatgatgagcatctcacagaagcattcaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25217146 attttgatggaaatggcaccttgaattgtgaagagttcatcacaatgagtgttcacatgagaaggcttggaaatgatgagcatctcacagaagcattcaa 25217245  T
Q  611 tttctttga 619  Q
    |||||||||    
T  25217246 tttctttga 25217254  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 1970261 - 1970069
Alignment:
Q  202 tttttgattgaaagcgtgtctggtgtccgacatgacaccaacacatgtgattacagacaattaatttatttcctcaaattattgttagtgttggcgtgtc 301  Q
    ||||| |||||| | || |||||||||||||||||||||||||  ||||||||||  | |||||||||||  | || |||||| ||||||||||||||||    
T  1970261 ttttttattgaaggtgtatctggtgtccgacatgacaccaacatgtgtgattacactcgattaatttattctcgcagattattattagtgttggcgtgtc 1970162  T
Q  302 agtgcttcatagattgcaacagttaatcactaaccgaatacaacccaaaatccttcataggaaagttttggctgatttccgtcattatccaaaa 395  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||| |||||||||||||    
T  1970161 agtgcttcatag-ttgcagcagttaatcactaaccgaatataacccgatttccttcataggaaagttttggctgatttccatcattatccaaaa 1970069  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 619
Target Start/End: Complemental strand, 1969938 - 1969903
Alignment:
Q  584 tgatgagcatctcacagaagcattcaatttctttga 619  Q
    ||||||||||||||||||||||||||||||||||||    
T  1969938 tgatgagcatctcacagaagcattcaatttctttga 1969903  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 408 - 519
Target Start/End: Complemental strand, 1970048 - 1969934
Alignment:
Q  408 agattcatattgctttaacaaattatatgaactttttctgtctagagcattgttacaataatgnnnnnnn---tgaacttggttgttaattgatgacaac 504  Q
    |||||||||| ||||||||||||| || || |||||||| |||  ||||||||||| |||||           ||||||||||| |||||||||||||||    
T  1970048 agattcatatagctttaacaaattctacgatctttttctatctgtagcattgttaccataatatgaaaaaaaatgaacttggttattaattgatgacaac 1969949  T
Q  505 aggcagattttgatg 519  Q
    ||||||||| |||||    
T  1969948 aggcagattgtgatg 1969934  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 24887415 - 24887468
Alignment:
Q  230 gacatgacaccaacacatgtgattacagacaattaatttatttcctcaaattat 283  Q
    ||||||||||| ||||||||||  |||  |||||||||||||||||||||||||    
T  24887415 gacatgacacctacacatgtgagaacattcaattaatttatttcctcaaattat 24887468  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 24937639 - 24937692
Alignment:
Q  230 gacatgacaccaacacatgtgattacagacaattaatttatttcctcaaattat 283  Q
    |||||||||||  | |||||||| |||  |||||||||||||||||||||||||    
T  24937639 gacatgacacctgcgcatgtgataacattcaattaatttatttcctcaaattat 24937692  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 9878016 - 9878103
Alignment:
Q  218 tgtctggtgtccgacatgacaccaacacatgtgattacagacaattaatttatttcctcaaattattgttagtgttggcgtgtcagtg 305  Q
    ||||| |||||||||||| |||  ||||| |||||||||  ||||||||| || | ||||||||||| || |||| | ||||||||||    
T  9878016 tgtctagtgtccgacatggcactgacacaagtgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtg 9878103  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 28322298 - 28322251
Alignment:
Q  236 acaccaacacatgtgattacagacaattaatttatttcctcaaattat 283  Q
    |||||||||||||||||||||  ||||||||| |||| ||||||||||    
T  28322298 acaccaacacatgtgattacattcaattaattcattttctcaaattat 28322251  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 44317232 - 44317274
Alignment:
Q  191 ttgcaccggcatttttgattgaaagcgtgtctggtgtccgaca 233  Q
    |||||||| || ||||||||||| |||||||||||||||||||    
T  44317232 ttgcaccgacacttttgattgaaggcgtgtctggtgtccgaca 44317274  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 13635661 - 13635611
Alignment:
Q  206 tgattgaaagcgtgtctggtgtccgacatgacaccaacacatgtgattaca 256  Q
    |||| ||| |||||||||||||| |||| |||||||| |||||||||||||    
T  13635661 tgatagaaggcgtgtctggtgtctgacacgacaccaaaacatgtgattaca 13635611  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 36895428 - 36895399
Alignment:
Q  227 tccgacatgacaccaacacatgtgattaca 256  Q
    ||||||||||||||||||||||||||||||    
T  36895428 tccgacatgacaccaacacatgtgattaca 36895399  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 18268007 - 18268075
Alignment:
Q  236 acaccaacacatgtgattacagacaattaatttatttcctcaaattattgttagtgttggcgtgtcagt 304  Q
    ||||| ||||||||||||||   ||||||||| |||| ||||||||||| | ||||||| | |||||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgttgacatgtcagt 18268075  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 27733917 - 27733884
Alignment:
Q  223 ggtgtccgacatgacaccaacacatgtgattaca 256  Q
    ||||||||||||||||||||||| ||||||||||    
T  27733917 ggtgtccgacatgacaccaacacttgtgattaca 27733884  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 32102856 - 32102920
Alignment:
Q  230 gacatgacaccaacacatgtgattacagacaattaatttatttcctcaaattattgttagtgttg 294  Q
    ||||||||||  ||| ||||||||| |  |||||||||||||| ||||||||||  |||||||||    
T  32102856 gacatgacactgacaaatgtgattatattcaattaatttattttctcaaattatcattagtgttg 32102920  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 3451920 - 3451864
Alignment:
Q  228 ccgacatgacaccaacacatgtgattacagacaattaatttatttcctcaaattatt 284  Q
    |||||| |||||||||||||||||||| |  |||||||||  ||| |||||||||||    
T  3451920 ccgacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatt 3451864  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 26777360 - 26777408
Alignment:
Q  217 gtgtctggtgtccgacatgacaccaacacatgtgattacagacaattaa 265  Q
    ||||| ||||||||||| |||||| |||||||||||||||  |||||||    
T  26777360 gtgtccggtgtccgacacgacacccacacatgtgattacattcaattaa 26777408  T

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