View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15954_low_6 (Length: 580)
Name: NF15954_low_6
Description: NF15954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15954_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Original strand, 38079424 - 38079989
Alignment:
| Q |
1 |
aggaacaaagaaagaacaacttcagcaagtcatcaaagacattaagtaaattaaatcaacaataaatataaatttaattaattctgtaccctatcctatg |
100 |
Q |
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| T |
38079424 |
aggaacaaagaaagaacaacttcagcaagtcatcaaagacattaagtaaattaaatcaacaataaatataaatttaattaattctgtaccctatcctatg |
38079523 |
T |
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| Q |
101 |
atcattttataacttacataatgtgttttatgaatttaagggagtttaaggaaactaccacggttgataaggttgttgtactctggactgccaacactga |
200 |
Q |
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| T |
38079524 |
atcattttataacttacataatgtgttttatgaatttaagggagtttaaggaaactaccaaggttgataaggttgttgtactctggactgccaacactga |
38079623 |
T |
|
| Q |
201 |
gaggtatagtaatattgttgtgggactaaatgacaccactgaaaatcttttggcttctgtggacaagaatgaagctgagatttcaccttcaaccctttat |
300 |
Q |
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| T |
38079624 |
gaggtatagtaatattgttgtgggactaaatgacaccactgaaaatcttttggcttctgtggacaagaatgaagctgagatttcaccttcaaccctttat |
38079723 |
T |
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| Q |
301 |
gccttggcttgtgctcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggttattttccaaattgccctttaattaatttta |
400 |
Q |
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| T |
38079724 |
gccttggcttgtgttcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggttattttccaaattgccctttaattaatttta |
38079823 |
T |
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| Q |
401 |
attttatgtatgcaaattaaatttcttgtaaccattatattatgaacgtaaccaatgagtgttgcaaatttttaaaaaattgaattttgcttgtatgatg |
500 |
Q |
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| T |
38079824 |
attttatgtatgcaaattaaatttcttgtgaccattatattatgaacgtaaccaatgagtgttgcaaattttaaaaaaattgaattttgcttgtatgatg |
38079923 |
T |
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| Q |
501 |
gttcattagggttgattgatctggccatcaaaaggaacagtttgattggtggagatgacttcaaga |
566 |
Q |
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| T |
38079924 |
gttcattagggttgattgatctggccatcaaaaggaacagtttgattggtggagatgacttcaaga |
38079989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 171 - 370
Target Start/End: Original strand, 39699156 - 39699355
Alignment:
| Q |
171 |
ggttgttgtactctggactgccaacactgagaggtatagtaatattgttgtgggactaaatgacaccactgaaaatcttttggcttctgtggacaagaat |
270 |
Q |
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| T |
39699156 |
ggttgttgtactctggactgccaacacagagaggtacagtaacttagttgtaggactcaatgacaccatggagaacctttttgctgctgtggacagaaat |
39699255 |
T |
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| Q |
271 |
gaagctgagatttcaccttcaaccctttatgccttggcttgtgctcttgaaaatgttccttttatcaatggaagccctcaaaacacctttgtcccaggtt |
370 |
Q |
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| T |
39699256 |
gagtctgagatttcaccttccaccctgtttgccattgcttgtgttatggagaatgttcctttcatcaatggaagtcctcagaacacttttgttccaggtt |
39699355 |
T |
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